Parental gene:

PSME1, ENSECAG00000016855

Aliases:None
Description:proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) [Source:HGNC Symbol;Acc:9568]
Organism:Horse (Equus caballus)
Coordinates:1:162045425..162046386(+)


>ENSECAG00000016855
GGCCCTCCCTGTGGCCCAGTGAACTGCAATGAGAAGATTGTAGTCCTTCTGCAGCGCCTAAAGCCTGAGATCAAGGATGT
CATTGAGCAGCTCAACCCTGTCACCACCTGGTTGCAGCTGCAGATACCTCGGATTGAGGATGGGAACAATTTCGGAGTGG
CTGTCCAGGAGAAGGTGTTTGAGCTGATGACCGCCCTTCACACCAAGCTGGAAGGCTTCCACACGCAAATCTCCAAGTAT
TTCTCTGAGCGAGGCGATGCTGTGACCAAAGCAGCCAAGCAGCCCCACGTGGGTGATTATCGGCAGCTGGTGCACGAGCT
GGATGAGGCAGAGTACCGGGACATCCGGCTGATGGTCATG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 23 .83 RPM
SRP021940_embryo 27 .72 RPM
SRP021940_cerebellum 21 .29 RPM
SRP021940_testis 19 .37 RPM
SRP021940_placental_villous 27 .09 RPM
SRP021940_articular_cartilage 18 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016433 possible_ortholog 1 retrogene
retro_amel_637,
Bos taurus ENSBTAG00000021395 ortholog_one2one 1 retrogene
retro_btau_1189,
Canis familiaris ENSCAFG00000011924 ortholog_one2one 1 retrogene
retro_cfam_246,
Equus caballus ENSECAG00000012620 within_species_paralog 2 retrogenes
retro_ecab_29, retro_ecab_827,
Felis catus ENSFCAG00000005583 possible_ortholog 1 retrogene
retro_fcat_1567,
Macropus eugenii ENSMEUG00000014712 ortholog_one2one 1 retrogene
retro_meug_1052,
Mus musculus ENSMUSG00000022216 ortholog_one2one 1 retrogene
retro_mmus_466,
Rattus norvegicus ENSRNOG00000019041 ortholog_one2many 1 retrogene
retro_rnor_50,
Tursiops truncatus ENSTTRG00000008620 ortholog_one2one 1 retrogene
retro_ttru_569,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1001 65.28 59.17
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Download FASTA sequences of all ENSECAG00000016855 retrocopies