RetrogeneDB - Parental gene ENSFCAG00000008729 details

							
>ENSFCAG00000008729
ATGGTGAAAGAAACTACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAGGAAGAATTGAAAAAGGCTTACAG

GAAATTGGCTTTGAAGTACCACCCTGACAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTATGAAG

TTCTCTCTGATGCGAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCAGGTGGTGGT

TTTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAGAGGAGAGGTAAAAATGT

TGTGCATCAGCTCTCTGTAACCTTAGAAGATTTATATAATGGTGCAACAAGAAAACTAGCTCTGCAAAAGAATGTGATTT

GTGACAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCGGTAGAATGTTGTCCCAATTGCCGAGGTACTGGAATGCAAATA

AGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAATCTGTGTGCATGGAGTGCCAGGGCCATGGGGAACGAAT

CAGTCCTAAAGATAGATGTAAAAGCTGCAACGGAAGGAAGATAGTTCGAGAAAAGAAGATTCTAGAAGTTCATATTGACA

AAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCTGGACTGGAACCAGGAGATATTATC

ATTGTTTTAGATCAGAAGGACCATGCTGTTTTTACTAGGCGAGGAGAGGATCTTTTCATGTGTATGGACATACAGCTGGT

TGAAGCACTGTGCGGCTTTCAAAAGCCAATATCTACTCTAGACAACAGAACCATTGTCATTACCTCTCATCCAGGTCAGA

TTGTCAAGCATGGAGATATCAAGTGTGTGCTGAATGAAGGCATGCCAATTTATCGTAGACCATACGAAAAGGGTCGCCTA

ATCATCGAATTTAAGGTAAACTTCCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTCTTTGCTGGAAAAGCTCCTACC

TGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGACCAGGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGAAGGC

GCCATTACAATGGAGAAGCGTATGAGGATGATGAACATCACCCTAGGGGAGGTGTTCAGTGTCAGACCTCTTAA

Library	Parental gene expression (RPM)
SRP017611_liver	55 .80 RPM
SRP017611_kidney	45 .04 RPM
SRP017611_brain	104 .44 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000007589	possible_ortholog	4 retrogenes	retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Bos taurus	ENSBTAG00000016265	possible_ortholog	6 retrogenes	retro_btau_1440, retro_btau_1599, retro_btau_1800, retro_btau_1826, retro_btau_574, retro_btau_828,
Canis familiaris	ENSCAFG00000001818	possible_ortholog	23 retrogenes	retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Choloepus hoffmanni	ENSCHOG00000000631	possible_ortholog	9 retrogenes	retro_chof_1760, retro_chof_186, retro_chof_2020, retro_chof_2541, retro_chof_2694, retro_chof_287, retro_chof_417, retro_chof_498, retro_chof_946,
Dasypus novemcinctus	ENSDNOG00000018342	possible_ortholog	3 retrogenes	retro_dnov_1139, retro_dnov_640, retro_dnov_884,
Homo sapiens	ENSG00000086061	possible_ortholog	4 retrogenes	retro_hsap_2331, retro_hsap_2569, retro_hsap_3647, retro_hsap_4889,
Gorilla gorilla	ENSGGOG00000007030	possible_ortholog	3 retrogenes	retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Macaca mulatta	ENSMMUG00000007740	ortholog_one2one	6 retrogenes	retro_mmul_1313, retro_mmul_1802, retro_mmul_2477, retro_mmul_2482, retro_mmul_2625, retro_mmul_400,
Monodelphis domestica	ENSMODG00000003384	ortholog_one2many	7 retrogenes	retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Nomascus leucogenys	ENSNLEG00000005268	ortholog_one2one	4 retrogenes	retro_nleu_1255, retro_nleu_2550, retro_nleu_2793, retro_nleu_509,
Oryctolagus cuniculus	ENSOCUG00000004833	ortholog_one2one	2 retrogenes	retro_ocun_516, retro_ocun_70,
Pongo abelii	ENSPPYG00000019141	possible_ortholog	4 retrogenes	retro_pabe_1892, retro_pabe_2111, retro_pabe_2559, retro_pabe_2994,
Pan troglodytes	ENSPTRG00000020852	possible_ortholog	4 retrogenes	retro_ptro_1499, retro_ptro_1705, retro_ptro_177, retro_ptro_2472,
Sarcophilus harrisii	ENSSHAG00000012366	ortholog_one2many	1 retrogene	retro_shar_762,
Sus scrofa	ENSSSCG00000011000	ortholog_one2one	2 retrogenes	retro_sscr_134, retro_sscr_984,
Tupaia belangeri	ENSTBEG00000000596	possible_ortholog	23 retrogenes	retro_tbel_1281, retro_tbel_134, retro_tbel_1529, retro_tbel_1542, retro_tbel_2260, retro_tbel_2293, retro_tbel_2316, retro_tbel_2428, retro_tbel_2445, retro_tbel_2917, retro_tbel_2965, retro_tbel_2972, retro_tbel_329, retro_tbel_3345, retro_tbel_3353, retro_tbel_3692, retro_tbel_4014, retro_tbel_4223, retro_tbel_432, retro_tbel_591, retro_tbel_617, retro_tbel_634, retro_tbel_842,
Tursiops truncatus	ENSTTRG00000007387	possible_ortholog	4 retrogenes	retro_ttru_1181, retro_ttru_1551, retro_ttru_567, retro_ttru_783,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_811	78.05	71.03	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_fcat_1241	91.37	84.38	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_fcat_1407	91.96	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_fcat_1502	79.71	85.39	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_fcat_1984	95.72	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000008729 retrocopies

Parental gene:	ENSFCAG00000008729
Aliases:	None
Description:	None
Organism:	*Cat (Felis catus)*
Coordinates:	D4:57527927..57536803(+)

Parental gene:

ENSFCAG00000008729