Parental gene:

ENSFCAG00000022000

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:D3:9489784..9521420(+)


>ENSFCAG00000022000
ATGTTCCGCGCCGCTGCCAGTCTCGGGCCCCGCCTGGGCCGCCGCCTCCTGTCGGCCGCCGCCACCCAGGCGGTACCGGC
CCCCAACCAGCAGCCTGAAGTCCTCTTCAACCAGATCTTCATAAACAATGAGTGGCACGATGCTGTCAGCAGGAAAACAT
TCCCCACCGTCAATCCATCCACTGGAGAAGTCATCTGTCAGGTAGCTGAAGGAGACAAGGAAGATGTGGACAAGGCAGTA
AAGGCTGCCCGGGACGCCTTCCAGTGGGGCTCACCCTGGCGCCGCATGGACGCATCCGATAGGGGCCGCCTGCTGAACCG
CCTGGCTGATCTGATTGAGCGGGACCGGACCTACCTGGCAGCCTTGGAGACGCTGGATAACGGCAAGCCCTACGTCATCT
CCTACCTGGTGGATTTGGACATGGTCCTTAAATGCCTCCGTTATTATGCTGGCTGGGCTGATAAGTACCATGGGAAAACC
ATTCCCATCGATGGGGACTTCTTCAGTTATACCCGCCATGAACCTGTCGGGGTGTGCGGGCAGATCATTCCGTGGAACTT
CCCGCTCCTGATGCAAGCCTGGAAACTGGGCCCAGCCCTGGCGACCGGAAACGTGGTTGTGATGAAGGTGGCTGAGCAGA
CTCCACTCACCGCCCTCTACGTGGCCAACCTCATTAAGGAGGCTGGCTTTCCCCCTGGTGTGGTCAATATTATCCCTGGA
TTTGGCCCCACAGCTGGGGCTGCCATCGCCTCCCATCAGGATGTGGACAAAGTAGCCTTCACGGGCTCCACTGAGGTTGG
CCACCTGATCCAGATTGCTGCAGGGAGCAGTAACCTCAAGAGAGTGACCCTGGAGCTGGGGGGAAAGAGCCCCAATATCA
TTATGTCAGATGCAGACATGAACTGGGCCGTGGAGCAGGCCCACTTTGCCCTGTTCTTCAACCAGGGCCAGTGCTGCTGT
GCGGGCTCCCGGACCTTTGTGCAAGAAGATGTTTATGCTGAGTTTGTGGAGCGGAGTGTCGCCCGGGCCAAGTCTCGTGT
AGTTGGGAACCCCTTTGACAGCCAGACGGAGCAGGGGCCACAGGTGGACAAAACTCAGTTTCAGAAGGTCCTCGGTTATA
TCAAATCTGGGAAGGAGGAGGGGGCGAAGCTGCTGTGTGGTGGAGGGGCGGCTGCTGACCGTGGCTACTTCATCCAGCCC
ACTGTGTTCGGAGATGTGCAAGACGGCATGACCATCGCCAAGGAGGAGATCTTTGGGCCAGTGATGCAGATCCTGAAGTT
CAAGACCATAGAGGAAGTCATTGGGAGAGCCAACAATTCCAAGTATGGGCTGGCTGCAGCTGTCTTCACCAAGGACTTGG
ACAAGGCCAATTATCTGTCCCAAGCCCTCCAGGCTGGCACTGTGTGGGTCAACTGCTATGATGTGTTTGGGGCCCAGTCA
CCGTTCGGAGGCTACAAGATGTCCGGGAATGGCCGGGAGCTAGGAGAGTATGGGCTGCAGGCATACACTGAAGTGAAAAC
GGTCACGATCAAAGTGCCTCAGAAGAACTCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 562 .97 RPM
SRP017611_kidney 672 .04 RPM
SRP017611_brain 157 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013664 ortholog_one2many 1 retrogene
retro_amel_51,
Bos taurus ENSBTAG00000008743 ortholog_one2one 1 retrogene
retro_btau_48,
Canis familiaris ENSCAFG00000008683 ortholog_one2many 1 retrogene
retro_cfam_1493,
Equus caballus ENSECAG00000017673 ortholog_one2one 2 retrogenes
retro_ecab_1054, retro_ecab_1061,
Homo sapiens ENSG00000111275 ortholog_one2many 1 retrogene
retro_hsap_19,
Gorilla gorilla ENSGGOG00000007108 ortholog_one2one 1 retrogene
retro_ggor_33,
Latimeria chalumnae ENSLACG00000011798 ortholog_one2one 1 retrogene
retro_lcha_108,
Microcebus murinus ENSMICG00000003487 ortholog_one2one 1 retrogene
retro_mmur_19,
Myotis lucifugus ENSMLUG00000017084 ortholog_one2one 1 retrogene
retro_mluc_1918,
Macaca mulatta ENSMMUG00000008336 ortholog_one2one 1 retrogene
retro_mmul_247,
Mustela putorius furo ENSMPUG00000002282 ortholog_one2one 1 retrogene
retro_mputfur_27,
Mus musculus ENSMUSG00000029455 ortholog_one2one 1 retrogene
retro_mmus_222,
Nomascus leucogenys ENSNLEG00000000016 ortholog_one2one 1 retrogene
retro_nleu_22,
Otolemur garnettii ENSOGAG00000033093 ortholog_one2one 1 retrogene
retro_ogar_203,
Pongo abelii ENSPPYG00000004966 ortholog_one2one 1 retrogene
retro_pabe_32,
Pteropus vampyrus ENSPVAG00000013189 ortholog_one2one 1 retrogene
retro_pvam_163,
Rattus norvegicus ENSRNOG00000001344 ortholog_one2one 1 retrogene
retro_rnor_307,
Sus scrofa ENSSSCG00000009889 ortholog_one2one 1 retrogene
retro_sscr_9,
Ictidomys tridecemlineatus ENSSTOG00000015009 ortholog_one2one 1 retrogene
retro_itri_33,
Xenopus tropicalis ENSXETG00000020930 ortholog_one2one 1 retrogene
retro_xtro_12,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1590 73.90 96.32
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Download FASTA sequences of all ENSFCAG00000022000 retrocopies