Parental gene: | MEST, ENSFCAG00000022984 |
| Aliases: | None |
| Description: | mesoderm specific transcript [Source:HGNC Symbol;Acc:7028] |
| Organism: | Cat (Felis catus) |
| Coordinates: | A2:146687394..146708667(+) |
>ENSFCAG00000022984
ATGAGGGAGTGGTGGGTGCAGGTGGGTCTGCTGGCTGTGCCCCTGCTTGCGGCCTACCTGCATATCCCACCCCCCCAGCT
TTCCCCTGCCCTTCACTCCTGGAAGTCGTCGGGCAAGTTTTTCACCTACAAGGGACTGCGCATCTTCTACCAAGACTCTG
TGGGTGTGGTTGGAAGTCCTGAGATAGTTGTGCTTTTGCATGGCTTTCCAACATCCAGCTATGATTGGTACAAGATTTGG
GAAGGTCTGACCCTAAGGTTTCATCGAGTGATCGCCCTTGATTTCTTGGGCTTTGGCTTCAGTGACAAACCGAGACCACA
TCACTATTCCATATTTGAGCAGGCCAGCATTGTGGAGGCACTTTTGCGGCACCTGGGGCTCCAGAACCGCAGGATCAACC
TTTTGTCTCATGACTATGGAGATATCGTTGCTCAGGAGCTGCTCTATAGGTTCAAGCAGAATCGATCTGGTCGGCTTACC
ATAAAGAGTCTCTGTCTGTCAAATGGAGGTATATTTCCTGAGACTCACCGTCCTCTCCTACTCCAAAAGCTCCTCAAAGA
TGGAGGCGTGCTGTCACCCATCCTGACACGATTGATGAACTTCTTTGTATTCTCCCGAGGTCTCACCCCAGTCTTTGGGC
CGTACACCCGCCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGCAACAATGACGGAAACTTAGTCATCGAC
AGTCTCTTACAGTACATCAACCAGAGGAAGAAGTTTAGAAGACGCTGGGTGGGAGCTCTTGCTTCTGTAACTATTCCCAT
TCATTTTATCTATGGGCCACTGGATCCCGTAAACCCCTATCCAGAGTTTTTGGAGCTGTACAGGAAAACGCTGCCGCGGT
CCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGATCCCATGGGCTTCTTGAATGCATATATG
GGCTTCATCAACTCCTTCTGA
ATGAGGGAGTGGTGGGTGCAGGTGGGTCTGCTGGCTGTGCCCCTGCTTGCGGCCTACCTGCATATCCCACCCCCCCAGCT
TTCCCCTGCCCTTCACTCCTGGAAGTCGTCGGGCAAGTTTTTCACCTACAAGGGACTGCGCATCTTCTACCAAGACTCTG
TGGGTGTGGTTGGAAGTCCTGAGATAGTTGTGCTTTTGCATGGCTTTCCAACATCCAGCTATGATTGGTACAAGATTTGG
GAAGGTCTGACCCTAAGGTTTCATCGAGTGATCGCCCTTGATTTCTTGGGCTTTGGCTTCAGTGACAAACCGAGACCACA
TCACTATTCCATATTTGAGCAGGCCAGCATTGTGGAGGCACTTTTGCGGCACCTGGGGCTCCAGAACCGCAGGATCAACC
TTTTGTCTCATGACTATGGAGATATCGTTGCTCAGGAGCTGCTCTATAGGTTCAAGCAGAATCGATCTGGTCGGCTTACC
ATAAAGAGTCTCTGTCTGTCAAATGGAGGTATATTTCCTGAGACTCACCGTCCTCTCCTACTCCAAAAGCTCCTCAAAGA
TGGAGGCGTGCTGTCACCCATCCTGACACGATTGATGAACTTCTTTGTATTCTCCCGAGGTCTCACCCCAGTCTTTGGGC
CGTACACCCGCCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGCAACAATGACGGAAACTTAGTCATCGAC
AGTCTCTTACAGTACATCAACCAGAGGAAGAAGTTTAGAAGACGCTGGGTGGGAGCTCTTGCTTCTGTAACTATTCCCAT
TCATTTTATCTATGGGCCACTGGATCCCGTAAACCCCTATCCAGAGTTTTTGGAGCTGTACAGGAAAACGCTGCCGCGGT
CCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGATCCCATGGGCTTCTTGAATGCATATATG
GGCTTCATCAACTCCTTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 2 .63 RPM |
| SRP017611_kidney | 7 .01 RPM |
| SRP017611_brain | 38 .10 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005659 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010760 | ortholog_one2many | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000006066 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000008227 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000006129 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000009499 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012841 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009224 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018006 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000019698 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000000502 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000020977 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000008404 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004934 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_fcat_326 | 68.40 | 81.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_fcat_1067 | 74.36 | 83.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_fcat_1645 | 74.85 | 50.61 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_fcat_1693 | 76.11 | 54.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_fcat_2004 | 70.56 | 65.34 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSFCAG00000022984 retrocopies