Parental gene:

ENSFCAG00000028446

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:F2:22598893..22602000(-)


>ENSFCAG00000028446
ATGTGGAACTTCAGACCTGAACCAAGAGAGAAGAAAAAGAAGGTTCCTGCTGTGCCAGAAACTCTCAAGAAAAAGCGAAG
GAATTTCGCAGAGTTGAAGATCAAGCGTCTGAGAAAGAAATTTGCCCAAAAAATGCTTCGAAAGGCAAGGAGGAAGCTTA
TTTATGAAAAAGCTAAGCATTACCACAAGGAATACAGGCAGATGTACAGAACTGAGATTCGAATGGCTAGAATGGCAAGA
AAAGCTGGCAACTTCTACGTACCTGCAGAACCCAAATTGGCATTTGTCATCAGGATCCGAGGTATCAATGGTGTGAGCCC
AAAGGTTCGAAAGGTGTTGCAGCTTCTTCGCCTTCGCCAGATCTTCAACGGCACCTTTGTTAAGCTCAACAAGGCTTCAG
TTAACATGCTAAGGATTGTGGAACCATATATTGCATGGGGGTACCCAAACCTGAAGTCAGTGAATGAATTGATCTACAAG
CGTGGTTATGGCAAAATCAACAAGAAGCGAATTGCCCTGACAGATAACACATTGATCGCTCGATCTCTTGGTAAATACGG
CATCATCTGCATGGAGGATCTGATTCATGAGATCTACACTGTTGGAAAACGTTTCAAAGAAGCAAACAACTTTTTATGGC
CCTTCAAGTTATCTTCTCCACGAGGGGGAATGAAGAAGAAGACCACCCATTTTGTAGAAGGTGGAGATGCTGGCAACAGG
GAAGACCAGATCAATAGGCTTATTAGAAGAATGAACTAA

Library Parental gene expression (RPM)
SRP017611_liver 467 .84 RPM
SRP017611_kidney 1226 .90 RPM
SRP017611_brain 224 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001821 ortholog_one2one 5 retrogenes
retro_amel_1230, retro_amel_1632, retro_amel_760, retro_amel_933, retro_amel_937,
Canis familiaris ENSCAFG00000008021 ortholog_one2many 28 retrogenes
retro_cfam_1039, retro_cfam_1075, retro_cfam_1079, retro_cfam_1167, retro_cfam_1209, retro_cfam_1236, retro_cfam_1270, retro_cfam_1308, retro_cfam_1390, retro_cfam_1436, retro_cfam_1445, retro_cfam_1453, retro_cfam_1524, retro_cfam_1541, retro_cfam_1699, retro_cfam_1755, retro_cfam_1855, retro_cfam_1856, retro_cfam_2051, retro_cfam_2192, retro_cfam_338, retro_cfam_403, retro_cfam_563, retro_cfam_609, retro_cfam_737, retro_cfam_74, retro_cfam_922, retro_cfam_998,
Dasypus novemcinctus ENSDNOG00000017654 possible_ortholog 15 retrogenes
retro_dnov_1561, retro_dnov_1692, retro_dnov_182, retro_dnov_1893, retro_dnov_209, retro_dnov_2158, retro_dnov_2568, retro_dnov_264, retro_dnov_2657, retro_dnov_279, retro_dnov_287, retro_dnov_365, retro_dnov_655, retro_dnov_77, retro_dnov_971,
Felis catus ENSFCAG00000009707 within_species_paralog 1 retrogene
retro_fcat_143,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2many 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_many2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Monodelphis domestica ENSMODG00000007136 ortholog_many2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Sus scrofa ENSSSCG00000006182 possible_ortholog 3 retrogenes
retro_sscr_1138, retro_sscr_209, retro_sscr_796,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_230 70.50 53.57
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2. retro_fcat_255 62.66 94.44
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3. retro_fcat_338 72.34 55.95
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4. retro_fcat_342 70.90 95.63
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5. retro_fcat_945 91.02 96.43
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6. retro_fcat_1643 66.96 88.89
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Download FASTA sequences of all ENSFCAG00000028446 retrocopies