Parental gene:

ENSFCAG00000028689

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:B4:78637847..78639612(-)


>ENSFCAG00000028689
CGTGAATGCATCTCCATCCACGTTGGCCAGGCTGGTGTTCAGATCGGCAATGCCTGCTGGGAGCTCTATTGCCTGGAACA
CGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCAGTG
AGACGGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAAGTTCGCACTGGC
ACCTACCGCCAGCTCTTCCATCCTGAGCAGCTCATCACGGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGCACTA
CACCATCGGCAAGGAGATCATCGACCTTGTCTTGGACCGAATTCGGAAACTGGCCGACCAGTGCACGGGTCTTCAGGGCT
TCTTGGTTTTCCACAGCTTTGGAGGGGGAACTGGTTCCGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGATTAT
GGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACTGCTGTCGTTGAGCCCTACAACTCCAT
CCTCACTACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAACGAGGCCATCTATGACATCTGTCGTA
GAAACCTCGATATTGAACGCCCAACCTACACTAACCTAAATAGGTTGATAGGTCAAATTGTGTCTTCCATCACTGCTTCC
CTCAGATTTGATGGAGCCCTGAATGTGGATCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTTCCC
TCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATGCGT
GCTTTGAGCCAGCCAACCAGATGGTGAAATGCGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGTGGT
GATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTCGTGGACTGGTGCCC
CACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACTGTGGTACCTGGTGGAGACCTGGCCAAAGTACAGCGAGCTG
TGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCCAAG
CGTGCCTTTGTTCACTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGCCCT
TGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAAGAGGAAGGAGAGGAATACTAA

Library Parental gene expression (RPM)
SRP017611_liver 7 .08 RPM
SRP017611_kidney 17 .62 RPM
SRP017611_brain 271 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006872 possible_ortholog 4 retrogenes
retro_amel_1162, retro_amel_1367, retro_amel_1387, retro_amel_1895,
Bos taurus ENSBTAG00000012244 possible_ortholog 1 retrogene
retro_btau_402,
Bos taurus ENSBTAG00000039992 possible_ortholog 1 retrogene
retro_btau_840,
Canis familiaris ENSCAFG00000008640 possible_ortholog 8 retrogenes
retro_cfam_1481, retro_cfam_1751, retro_cfam_1895, retro_cfam_1917, retro_cfam_1979, retro_cfam_2000, retro_cfam_463, retro_cfam_926,
Canis familiaris ENSCAFG00000008661 possible_ortholog 2 retrogenes
retro_cfam_960, retro_cfam_978,
Choloepus hoffmanni ENSCHOG00000008444 ortholog_one2one 2 retrogenes
retro_chof_179, retro_chof_360,
Callithrix jacchus ENSCJAG00000020874 possible_ortholog 2 retrogenes
retro_cjac_1603, retro_cjac_1861,
Cavia porcellus ENSCPOG00000013016 possible_ortholog 1 retrogene
retro_cpor_96,
Dipodomys ordii ENSDORG00000000154 possible_ortholog 3 retrogenes
retro_dord_460, retro_dord_564, retro_dord_786,
Equus caballus ENSECAG00000009504 possible_ortholog 1 retrogene
retro_ecab_1041,
Erinaceus europaeus ENSEEUG00000004068 possible_ortholog 1 retrogene
retro_eeur_669,
Echinops telfairi ENSETEG00000010296 possible_ortholog 2 retrogenes
retro_etel_1816, retro_etel_1993,
Felis catus ENSFCAG00000022091 within_species_paralog 2 retrogenes
retro_fcat_1375, retro_fcat_647,
Felis catus ENSFCAG00000024852 within_species_paralog 1 retrogene
retro_fcat_361,
Felis catus ENSFCAG00000027011 within_species_paralog 1 retrogene
retro_fcat_588,
Felis catus ENSFCAG00000027277 within_species_paralog 1 retrogene
retro_fcat_596,
Homo sapiens ENSG00000123416 possible_ortholog 1 retrogene
retro_hsap_808,
Loxodonta africana ENSLAFG00000010021 possible_ortholog 1 retrogene
retro_lafr_326,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Macropus eugenii ENSMEUG00000011167 possible_ortholog 4 retrogenes
retro_meug_1121, retro_meug_157, retro_meug_1616, retro_meug_1964,
Microcebus murinus ENSMICG00000000804 possible_ortholog 1 retrogene
retro_mmur_103,
Microcebus murinus ENSMICG00000017551 possible_ortholog 3 retrogenes
retro_mmur_144, retro_mmur_705, retro_mmur_885,
Myotis lucifugus ENSMLUG00000002622 possible_ortholog 4 retrogenes
retro_mluc_154, retro_mluc_186, retro_mluc_234, retro_mluc_270,
Monodelphis domestica ENSMODG00000015206 possible_ortholog 2 retrogenes
retro_mdom_1632, retro_mdom_348,
Mus musculus ENSMUSG00000023004 possible_ortholog 6 retrogenes
retro_mmus_1562, retro_mmus_1607, retro_mmus_1742, retro_mmus_1987, retro_mmus_3297, retro_mmus_3327,
Mus musculus ENSMUSG00000043091 possible_ortholog 1 retrogene
retro_mmus_843,
Oryctolagus cuniculus ENSOCUG00000028032 possible_ortholog 1 retrogene
retro_ocun_111,
Otolemur garnettii ENSOGAG00000009435 ortholog_one2one 1 retrogene
retro_ogar_240,
Pan troglodytes ENSPTRG00000012950 possible_ortholog 1 retrogene
retro_ptro_2158,
Pteropus vampyrus ENSPVAG00000004646 possible_ortholog 1 retrogene
retro_pvam_929,
Pteropus vampyrus ENSPVAG00000010798 possible_ortholog 1 retrogene
retro_pvam_1019,
Rattus norvegicus ENSRNOG00000003597 possible_ortholog 1 retrogene
retro_rnor_2819,
Rattus norvegicus ENSRNOG00000015544 possible_ortholog 3 retrogenes
retro_rnor_1193, retro_rnor_2260, retro_rnor_960,
Sus scrofa ENSSSCG00000000190 possible_ortholog 2 retrogenes
retro_sscr_380, retro_sscr_702,
Ictidomys tridecemlineatus ENSSTOG00000019497 possible_ortholog 1 retrogene
retro_itri_203,
Tupaia belangeri ENSTBEG00000001671 possible_ortholog 1 retrogene
retro_tbel_3700,
Tarsius syrichta ENSTSYG00000013266 possible_ortholog 7 retrogenes
retro_tsyr_1014, retro_tsyr_1278, retro_tsyr_1281, retro_tsyr_1679, retro_tsyr_1834, retro_tsyr_243, retro_tsyr_6,
Tursiops truncatus ENSTTRG00000004794 possible_ortholog 1 retrogene
retro_ttru_407,
Tursiops truncatus ENSTTRG00000010042 possible_ortholog 1 retrogene
retro_ttru_531,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_254 92.48 99.78
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_fcat_798 88.72 99.78
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_fcat_1802 71.36 89.33
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSFCAG00000028689 retrocopies