Parental gene:

RPL32, ENSFCAG00000030450

Aliases:None
Description:ribosomal protein L32 [Source:HGNC Symbol;Acc:10336]
Organism:Cat (Felis catus)
Coordinates:A2:53103199..53106386(-)


>ENSFCAG00000030450
ATGGCTGCCCTCAGACCTCTGGTGAAGCCCAAGATCGTTAAAAAGAGGACCAAGAAGTTCATCCGGCACCAGTCAGACCG
ATATGTCAAAATTAAGCGCAACTGGCGGAAACCCAGAGGCATTGATAATAGGGTGCGCAGAAGATTCAAGGGCCAGATTT
TGATGCCCAACATTGGTTACGGGAGCAACAAGAAAACAAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTCCTAGTCCAC
AATGTCAAGGAGCTTGAGGTGCTGCTGATGTGCAACAAATCTTACTGTGCAGAGATTGCTCACAATGTCTCCTCCAAGAA
CCGTAAAGCCATTGTGGAAAGAGCAGCCCAGCTGGCCATCAGAGTCACGAATCCCAATGCCAGACTGCGCAGCGAAGAAA
ATGAATAG

Library Parental gene expression (RPM)
SRP017611_liver 69 .75 RPM
SRP017611_kidney 135 .83 RPM
SRP017611_brain 27 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014763 ortholog_one2many 3 retrogenes
retro_acar_104, retro_acar_125, retro_acar_67,
Ailuropoda melanoleuca ENSAMEG00000004583 possible_ortholog 26 retrogenes
retro_amel_1004, retro_amel_1041, retro_amel_1059, retro_amel_112, retro_amel_1274, retro_amel_1284, retro_amel_13, retro_amel_1394, retro_amel_1450, retro_amel_150, retro_amel_1651, retro_amel_168, retro_amel_1766, retro_amel_1827, retro_amel_1897, retro_amel_274, retro_amel_275, retro_amel_44, retro_amel_573, retro_amel_658, retro_amel_71, retro_amel_776, retro_amel_781, retro_amel_871, retro_amel_892, retro_amel_923,
Bos taurus ENSBTAG00000015283 possible_ortholog 10 retrogenes
retro_btau_1102, retro_btau_1391, retro_btau_1568, retro_btau_1645, retro_btau_1728, retro_btau_1764, retro_btau_377, retro_btau_623, retro_btau_631, retro_btau_654,
Choloepus hoffmanni ENSCHOG00000013534 possible_ortholog 27 retrogenes
retro_chof_1131, retro_chof_1164, retro_chof_1181, retro_chof_1234, retro_chof_1461, retro_chof_152, retro_chof_1821, retro_chof_1957, retro_chof_2022, retro_chof_205, retro_chof_2090, retro_chof_2146, retro_chof_2242, retro_chof_2265, retro_chof_2301, retro_chof_2410, retro_chof_2509, retro_chof_2527, retro_chof_2606, retro_chof_276, retro_chof_286, retro_chof_313, retro_chof_554, retro_chof_585, retro_chof_607, retro_chof_758, retro_chof_913,
Equus caballus ENSECAG00000007201 possible_ortholog 4 retrogenes
retro_ecab_1115, retro_ecab_26, retro_ecab_369, retro_ecab_698,
Loxodonta africana ENSLAFG00000032737 ortholog_one2one 1 retrogene
retro_lafr_14,
Macaca mulatta ENSMMUG00000001340 ortholog_one2one 6 retrogenes
retro_mmul_106, retro_mmul_117, retro_mmul_126, retro_mmul_79, retro_mmul_93, retro_mmul_95,
Pongo abelii ENSPPYG00000013391 ortholog_one2one 2 retrogenes
retro_pabe_135, retro_pabe_98,
Rattus norvegicus ENSRNOG00000010746 possible_ortholog 4 retrogenes
retro_rnor_179, retro_rnor_27, retro_rnor_278, retro_rnor_327,
Sarcophilus harrisii ENSSHAG00000012782 ortholog_one2many 1 retrogene
retro_shar_580,
Tupaia belangeri ENSTBEG00000012875 ortholog_one2one 3 retrogenes
retro_tbel_3304, retro_tbel_47, retro_tbel_51,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_16 76.87 99.26
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2. retro_fcat_95 68.15 100.00
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3. retro_fcat_144 76.64 100.00
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4. retro_fcat_191 82.61 100.00
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5. retro_fcat_319 75.00 91.85
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6. retro_fcat_357 85.93 99.26
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7. retro_fcat_412 64.49 100.00
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8. retro_fcat_435 78.81 86.67
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9. retro_fcat_438 77.04 99.26
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10. retro_fcat_499 71.85 99.26
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11. retro_fcat_510 57.38 88.15
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12. retro_fcat_660 73.19 100.00
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13. retro_fcat_740 69.85 100.00
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14. retro_fcat_745 71.53 100.00
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15. retro_fcat_893 69.67 88.89
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16. retro_fcat_936 66.12 88.15
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17. retro_fcat_979 82.22 100.00
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18. retro_fcat_997 61.94 97.04
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19. retro_fcat_1014 75.91 100.00
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20. retro_fcat_1063 71.32 99.26
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21. retro_fcat_1173 77.12 85.93
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22. retro_fcat_1185 77.37 100.00
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23. retro_fcat_1186 71.67 87.41
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24. retro_fcat_1340 86.13 100.00
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25. retro_fcat_1402 80.43 100.00
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26. retro_fcat_1515 80.60 98.52
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27. retro_fcat_1526 75.83 88.15
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28. retro_fcat_1600 77.24 90.37
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29. retro_fcat_1620 99.26 100.00
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30. retro_fcat_1665 74.81 100.00
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31. retro_fcat_1674 74.07 100.00
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32. retro_fcat_1779 61.15 100.00
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33. retro_fcat_1819 73.17 89.63
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34. retro_fcat_1847 69.17 97.78
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35. retro_fcat_1857 83.09 100.00
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36. retro_fcat_1863 74.07 99.26
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37. retro_fcat_1912 82.48 100.00
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38. retro_fcat_1981 76.92 95.56
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Download FASTA sequences of all ENSFCAG00000030450 retrocopies