Parental gene: | SPOPL, ENSG00000144228 |
| Aliases: | SPOPL, BTBD33 |
| Description: | speckle-type POZ protein-like [Source:HGNC Symbol;Acc:27934] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 2:139259370..139331117(+) |
>ENSG00000144228
ATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATATGTCTACTGGTCCCATAGCAGAAAGCTGGTGTTACACACAGGT
TAAAGTAGTAAAATTTTCCTATATGTGGACCATTAATAACTTCAGTTTTTGTCGAGAGGAAATGGGTGAAGTGTTAAAAA
GTTCAACATTTTCATCTGGCCCAAGTGACAAAATGAAATGGTGCCTGAGGGTAAACCCAAAGGGATTAGATGATGAAAGT
AAAGACTACTTGTCCTTATATTTGCTTTTAGTCAGCTGCCCCAAAAGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCT
GAATGCTAAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTGCAAGGGAAGGACTGGGGTTTTA
AAAAATTCATTAGAAGGGACTTTTTGCTTGATGAAGCTAATGGTCTTTTACCAGATGACAAGCTTACATTATTTTGTGAG
GTGAGTGTGGTCCAAGATTCAGTAAACATATCAGGACATACTAATACAAATACTTTGAAGGTGCCTGAGTGTCGTCTAGC
AGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGACTGCAGTTTTTTCGTGAGAGGACAAGAATTTAAAGCTC
ATAAATCTGTGCTTGCAGCTCGATCTCCAGTTTTTAACGCCATGTTTGAACATGAAATGGAAGAAAGCAAAAAGAATCGA
GTGGAAATAAATGATTTAGACCCTGAAGTTTTTAAAGAAATGATGAGATTCATTTACACAGGGAGAGCACCAAACCTTGA
CAAAATGGCTGACAACTTGTTGGCAGCTGCAGACAAATATGCACTGGAACGGCTGAAGGTCATGTGCGAAGAAGCTTTGT
GTAGTAACCTCTCAGTAGAGAATGTTGCAGATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCACAA
GCCATAGACTTTATTAATAGGTGCAGTGTACTTCGACAACTTGGGTGTAAAGATGGGAAAAACTGGAACAGCAACCAAGC
AACCGACATAATGGAAACATCAGGGTGGAAGTCCATGATTCAGTCTCACCCTCATTTAGTAGCAGAAGCCTTTCGAGCAC
TAGCATCTGCACAGTGTCCACAGTTTGGCATTCCACGCAAACGGCTAAAACAGTCCTGA
ATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATATGTCTACTGGTCCCATAGCAGAAAGCTGGTGTTACACACAGGT
TAAAGTAGTAAAATTTTCCTATATGTGGACCATTAATAACTTCAGTTTTTGTCGAGAGGAAATGGGTGAAGTGTTAAAAA
GTTCAACATTTTCATCTGGCCCAAGTGACAAAATGAAATGGTGCCTGAGGGTAAACCCAAAGGGATTAGATGATGAAAGT
AAAGACTACTTGTCCTTATATTTGCTTTTAGTCAGCTGCCCCAAAAGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCT
GAATGCTAAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTGCAAGGGAAGGACTGGGGTTTTA
AAAAATTCATTAGAAGGGACTTTTTGCTTGATGAAGCTAATGGTCTTTTACCAGATGACAAGCTTACATTATTTTGTGAG
GTGAGTGTGGTCCAAGATTCAGTAAACATATCAGGACATACTAATACAAATACTTTGAAGGTGCCTGAGTGTCGTCTAGC
AGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGACTGCAGTTTTTTCGTGAGAGGACAAGAATTTAAAGCTC
ATAAATCTGTGCTTGCAGCTCGATCTCCAGTTTTTAACGCCATGTTTGAACATGAAATGGAAGAAAGCAAAAAGAATCGA
GTGGAAATAAATGATTTAGACCCTGAAGTTTTTAAAGAAATGATGAGATTCATTTACACAGGGAGAGCACCAAACCTTGA
CAAAATGGCTGACAACTTGTTGGCAGCTGCAGACAAATATGCACTGGAACGGCTGAAGGTCATGTGCGAAGAAGCTTTGT
GTAGTAACCTCTCAGTAGAGAATGTTGCAGATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCACAA
GCCATAGACTTTATTAATAGGTGCAGTGTACTTCGACAACTTGGGTGTAAAGATGGGAAAAACTGGAACAGCAACCAAGC
AACCGACATAATGGAAACATCAGGGTGGAAGTCCATGATTCAGTCTCACCCTCATTTAGTAGCAGAAGCCTTTCGAGCAC
TAGCATCTGCACAGTGTCCACAGTTTGGCATTCCACGCAAACGGCTAAAACAGTCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 14 .45 RPM |
| bodymap2_lung | 51 .48 RPM |
| bodymap2_breast | 45 .12 RPM |
| bodymap2_adipose | 44 .53 RPM |
| bodymap2_adrenal | 30 .19 RPM |
| bodymap2_skeletal_muscle | 14 .19 RPM |
| bodymap2_thyroid | 35 .74 RPM |
| bodymap2_prostate | 59 .08 RPM |
| bodymap2_colon | 64 .97 RPM |
| bodymap2_testis | 37 .95 RPM |
| bodymap2_brain | 40 .57 RPM |
| bodymap2_heart | 27 .89 RPM |
| bodymap2_white_blood_cells | 140 .28 RPM |
| bodymap2_lymph_node | 47 .53 RPM |
| bodymap2_ovary | 42 .76 RPM |
| bodymap2_kidney | 36 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000014763 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000016285 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002560 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013800 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006944 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000012825 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000012504 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2943 | 77.98 | 55.10 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_3048 | 82.38 | 65.82 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000144228 retrocopies