Parental gene: | TPM4, ENSGGOG00000014510 |
| Aliases: | None |
| Description: | None |
| Organism: | Gorilla (Gorilla gorilla) |
| Coordinates: | 19:16386973..16406044(+) |
>ENSGGOG00000014510
ATGGCCGGCCTCAACTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCGGAAGACCG
CGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGCGAGAAAGCTGAAGGTGATGTGGCCGCCCTCAACC
GACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACGGCCCTGCAGAAGCTGGAGGAGGCA
GAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAGGATGAGGAGAAGATGGAGAT
TCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGAAGAGGCTGACCGCAAATACGAGGAGGTAGCTCGTAAGCTGG
TCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAA
CTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGACAAATATGAAGA
AGAAATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACGGTTGCAAAACTGG
AAAAGACAATTGATGACCTGGAAGATGAGTTATACGCTCAGAAGCTCAAGTACAAAGCTATCAGCGAGGAACTGGACCAC
GCTCTCAACGACATGACCTCTCTCTGA
ATGGCCGGCCTCAACTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCGGAAGACCG
CGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGCGAGAAAGCTGAAGGTGATGTGGCCGCCCTCAACC
GACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACGGCCCTGCAGAAGCTGGAGGAGGCA
GAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAGGATGAGGAGAAGATGGAGAT
TCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGAAGAGGCTGACCGCAAATACGAGGAGGTAGCTCGTAAGCTGG
TCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAA
CTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGACAAATATGAAGA
AGAAATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACGGTTGCAAAACTGG
AAAAGACAATTGATGACCTGGAAGATGAGTTATACGCTCAGAAGCTCAAGTACAAAGCTATCAGCGAGGAACTGGACCAC
GCTCTCAACGACATGACCTCTCTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 39 .56 RPM |
| SRP007412_cerebellum | 70 .96 RPM |
| SRP007412_heart | 22 .20 RPM |
| SRP007412_kidney | 21 .75 RPM |
| SRP007412_liver | 20 .60 RPM |
| SRP007412_testis | 113 .34 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000004553 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000015796 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014135 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000167460 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012668 | within_species_paralog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000014882 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000031799 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000005413 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000009884 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000010637 | ortholog_one2one | 10 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000009755 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000024252 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012927 | ortholog_one2one | 7 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010642 | ortholog_one2one | 9 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014542 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ggor_609 | 69.46 | 80.24 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ggor_1836 | 74.62 | 52.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ggor_2665 | 81.42 | 89.11 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ggor_2801 | 90.38 | 96.37 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSGGOG00000014510 retrocopies