Parental gene: | SRM, ENSMMUG00000019321 |
| Aliases: | None |
| Description: | spermidine synthase [Source:RefSeq peptide;Acc:NP_001244736] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 1:14165070..14170503(-) |
>ENSMMUG00000019321
ATGGAGCCCGGCCCCGATGGCCCCGCTGCATCCGGCCCCGCCGCCATCCGCGAGGGCTGGTTCCGCGAGACCTGCAGTCT
GTGGCCCGGCCAGGCCCTGTCGCTGCAGGTGGAGCAGCTGCTCCACCACCGGCGCTCGCGCTACCAGGACATCCTAGTCT
TCCGCAGTAAGACCTATGGCAACGTGCTGGTGTTGGACGGTGTCATCCAGTGCACGGAGAGGGACGAGTTCTCCTACCAG
GAGATGATCGCCAACCTGCCTCTCTGCAGCCACCCCAACCCGCGAAAGGTGCTGATCATCGGGGGCGGAGATGGAGGTGT
CCTGCGTGAGGTGGTGAAGCACCCCTCCGTGGAGTCTGTGGTCCAGTGTGAGATAGACGAGGATGTCATCCAAGTCTCCA
AGAAGTTCCTGCCAGGCATGGCCATTGGCTACTCTAGCTCGAAGCTGACCCTACATGTGGGTGACGGTTTTGAGTTCATG
AAACAGAATCAGGATGCCTTCGATGTGATCATCACTGACTCCTCAGACCCTATGGGCCCCGCCGAAAGTCTCTTCAAGGA
GTCCTATTACCAGCTTATGAAGACGGCCCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGTGAGTGCCAGTGGCTGCACC
TGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTACGCCTACTGCACCATCCCCACC
TACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACCAACTTCCAGGAGCCGGTGCAGCCGCTGAC
GCAGCACCAGGTGGCACAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCCTTCGTGCTGCCCGAGTTTG
CCCGCAAGGCCCTGAATGACGTGAGCTGA
ATGGAGCCCGGCCCCGATGGCCCCGCTGCATCCGGCCCCGCCGCCATCCGCGAGGGCTGGTTCCGCGAGACCTGCAGTCT
GTGGCCCGGCCAGGCCCTGTCGCTGCAGGTGGAGCAGCTGCTCCACCACCGGCGCTCGCGCTACCAGGACATCCTAGTCT
TCCGCAGTAAGACCTATGGCAACGTGCTGGTGTTGGACGGTGTCATCCAGTGCACGGAGAGGGACGAGTTCTCCTACCAG
GAGATGATCGCCAACCTGCCTCTCTGCAGCCACCCCAACCCGCGAAAGGTGCTGATCATCGGGGGCGGAGATGGAGGTGT
CCTGCGTGAGGTGGTGAAGCACCCCTCCGTGGAGTCTGTGGTCCAGTGTGAGATAGACGAGGATGTCATCCAAGTCTCCA
AGAAGTTCCTGCCAGGCATGGCCATTGGCTACTCTAGCTCGAAGCTGACCCTACATGTGGGTGACGGTTTTGAGTTCATG
AAACAGAATCAGGATGCCTTCGATGTGATCATCACTGACTCCTCAGACCCTATGGGCCCCGCCGAAAGTCTCTTCAAGGA
GTCCTATTACCAGCTTATGAAGACGGCCCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGTGAGTGCCAGTGGCTGCACC
TGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTACGCCTACTGCACCATCCCCACC
TACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACCAACTTCCAGGAGCCGGTGCAGCCGCTGAC
GCAGCACCAGGTGGCACAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCCTTCGTGCTGCCCGAGTTTG
CCCGCAAGGCCCTGAATGACGTGAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 51 .80 RPM |
| SRP007412_brain | 14 .79 RPM |
| SRP007412_cerebellum | 9 .62 RPM |
| SRP007412_heart | 12 .37 RPM |
| SRP007412_kidney | 11 .15 RPM |
| SRP007412_liver | 43 .46 RPM |
| SRP007412_testis | 7 .58 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002354 | ortholog_one2one | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000013348 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000116649 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014385 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000028297 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000007002 | ortholog_many2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017585 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000016435 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000006442 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009532 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000012079 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001892 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000000138 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000027689 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_1500 | 93.25 | 83.44 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_2259 | 63.32 | 65.56 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000019321 retrocopies