Parental gene:

EDF1, ENSMODG00000017329

Aliases:None
Description:endothelial differentiation-related factor 1 [Source:HGNC Symbol;Acc:3164]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:469015614..469022538(-)


>ENSMODG00000017329
ATGGCCGAGAGCGACTGGGACACGGTGACGGTTCTGCGCAAGAAGGGCCCCACGGCGGCCCAGGCCAAGTCCAAGCAGGC
CATCTTAGCAGCCCAGAGAAGAGGAGAAGATGTGGAGACTTCCAAGAAATGGGCTGCTGGCCAAAACAAACAGCACTCCA
TCACAAAGAACACAGCCAAGCTGGATCGAGAGACTGAAGAACTTCACCATGACAGAGTCACTCTAGAAGTGGGCAAAGTG
ATCCAACAGGGCCGGCAGAGCAAGGGACTAACACAGAAGGATCTGGCCACAAAAATCAATGAAAAGCCCCAAGTTATTGC
TGACTATGAGTGCGGACGGGCCATTCCTAATAATCAGGTCTTGGGCAAGATCGAAAGAGCCATTGGCCTCAAGCTTCGTG
GAAAGGACATTGGAAAGCCGCTTGAGACAGGACCAAAGGGGAAATGA

Library Parental gene expression (RPM)
SRP007412_brain 385 .24 RPM
SRP007412_cerebellum 375 .42 RPM
SRP007412_heart 386 .94 RPM
SRP007412_kidney 513 .56 RPM
SRP007412_liver 339 .35 RPM
SRP007412_testis 997 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013266 ortholog_one2one 2 retrogenes
retro_amel_1569, retro_amel_996,
Canis familiaris ENSCAFG00000019544 ortholog_one2one 4 retrogenes
retro_cfam_1283, retro_cfam_1812, retro_cfam_363, retro_cfam_895,
Callithrix jacchus ENSCJAG00000011166 ortholog_one2many 1 retrogene
retro_cjac_374,
Erinaceus europaeus ENSEEUG00000009565 ortholog_one2one 1 retrogene
retro_eeur_635,
Loxodonta africana ENSLAFG00000026812 ortholog_one2one 1 retrogene
retro_lafr_751,
Macropus eugenii ENSMEUG00000015037 possible_ortholog 7 retrogenes
retro_meug_108, retro_meug_1742, retro_meug_1805, retro_meug_2070, retro_meug_38, retro_meug_598, retro_meug_773,
Microcebus murinus ENSMICG00000016498 ortholog_one2one 1 retrogene
retro_mmur_312,
Macaca mulatta ENSMMUG00000005051 ortholog_one2many 1 retrogene
retro_mmul_89,
Mustela putorius furo ENSMPUG00000011008 ortholog_one2one 1 retrogene
retro_mputfur_1377,
Mus musculus ENSMUSG00000015092 ortholog_one2one 3 retrogenes
retro_mmus_3324, retro_mmus_688, retro_mmus_809,
Rattus norvegicus ENSRNOG00000016272 ortholog_one2one 4 retrogenes
retro_rnor_1407, retro_rnor_2005, retro_rnor_2007, retro_rnor_2616,
Sorex araneus ENSSARG00000007191 ortholog_one2many 1 retrogene
retro_sara_39,
Tupaia belangeri ENSTBEG00000014060 ortholog_one2one 4 retrogenes
retro_tbel_1404, retro_tbel_1950, retro_tbel_3538, retro_tbel_967,
Tursiops truncatus ENSTTRG00000002668 ortholog_one2one 2 retrogenes
retro_ttru_165, retro_ttru_894,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_1713 76.67 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMODG00000017329 retrocopies