Parental gene: | Apex1, ENSMUSG00000035960 |
| Aliases: | Apex1, APE, Apex, HAP1, Ref-1 |
| Description: | apurinic/apyrimidinic endonuclease 1 [Source:MGI Symbol;Acc:MGI:88042] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 14:50924967..50927139(+) |
>ENSMUSG00000035960
ATGCCAAAGCGGGGAAAGAAAGCGGCGGCCGACGACGGGGAAGAACCCAAGTCGGAGCCAGAGACCAAGAAGAGTAAGGG
GGCAGCAAAGAAAACCGAGAAGGAGGCCGCGGGAGAGGGCCCTGTCCTGTACGAGGACCCTCCAGATCAGAAAACCTCAC
CCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGGCTTCGAGCCTGGATTAAAAAGAAAGGTTTG
GATTGGGTAAAGGAAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACT
GCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCGTCAGACAAAGAAGGATACAGTGGTGTGGGCCTACTTT
CCCGCCAGTGCCCGCTAAAAGTCTCTTATGGCATTGGCGAGGAAGAACATGATCAAGAAGGCCGGGTGATTGTGGCTGAA
TTTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTG
GGATGAAGCCTTCCGAAAGTTTCTAAAGGACTTGGCTTCCAGAAAGCCTCTTGTGCTATGTGGGGATCTCAATGTGGCTC
ATGAAGAAATTGACCTCCGTAACCCCAAAGGAAACAAAAAGAATGCTGGCTTTACTCCCCAGGAGCGCCAAGGTTTTGGG
GAACTGCTACAAGCTGTACCATTGGCTGACAGCTTCCGGCATCTCTACCCCAACACTGCTTACGCTTACACTTTCTGGAC
TTACATGATGAATGCCCGCTCTAAGAATGTTGGTTGGCGCCTTGATTACTTTTTGCTTTCCCACTCTCTTTTACCTGCAT
TGTGTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGACCACTGTCCCATCACCCTTTACCTAGCACTGTGA
ATGCCAAAGCGGGGAAAGAAAGCGGCGGCCGACGACGGGGAAGAACCCAAGTCGGAGCCAGAGACCAAGAAGAGTAAGGG
GGCAGCAAAGAAAACCGAGAAGGAGGCCGCGGGAGAGGGCCCTGTCCTGTACGAGGACCCTCCAGATCAGAAAACCTCAC
CCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGGCTTCGAGCCTGGATTAAAAAGAAAGGTTTG
GATTGGGTAAAGGAAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACT
GCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCGTCAGACAAAGAAGGATACAGTGGTGTGGGCCTACTTT
CCCGCCAGTGCCCGCTAAAAGTCTCTTATGGCATTGGCGAGGAAGAACATGATCAAGAAGGCCGGGTGATTGTGGCTGAA
TTTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTG
GGATGAAGCCTTCCGAAAGTTTCTAAAGGACTTGGCTTCCAGAAAGCCTCTTGTGCTATGTGGGGATCTCAATGTGGCTC
ATGAAGAAATTGACCTCCGTAACCCCAAAGGAAACAAAAAGAATGCTGGCTTTACTCCCCAGGAGCGCCAAGGTTTTGGG
GAACTGCTACAAGCTGTACCATTGGCTGACAGCTTCCGGCATCTCTACCCCAACACTGCTTACGCTTACACTTTCTGGAC
TTACATGATGAATGCCCGCTCTAAGAATGTTGGTTGGCGCCTTGATTACTTTTTGCTTTCCCACTCTCTTTTACCTGCAT
TGTGTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGACCACTGTCCCATCACCCTTTACCTAGCACTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 3 .11 RPM |
| SRP007412_cerebellum | 2 .04 RPM |
| SRP007412_heart | 2 .71 RPM |
| SRP007412_kidney | 2 .44 RPM |
| SRP007412_liver | 3 .66 RPM |
| SRP007412_testis | 4 .44 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000002745 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000004855 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000021872 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000025269 | within_species_paralog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000013335 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000009663 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010096 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000006405 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_433 | 85.80 | 95.48 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_2027 | 70.56 | 60.88 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000035960 retrocopies