Parental gene: | DEK, ENSOCUG00000003869 |
| Aliases: | None |
| Description: | DEK oncogene [Source:HGNC Symbol;Acc:2768] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | GL018711:1862214..1904661(+) |
>ENSOCUG00000003869
ATGTCTTCGTCGGCTCCCGCTGCGGAGGGAGAGGGCACCACCGCCCAGCCCGCGTCCGAGAAGGAGCCCGACATGCCCGG
CCCGAGAGAGGAGAGCGAGGAGGAGGACGAAGACGACGAAGAGGAGGATGAAGAGGAGGAGAAAGAAAAGAGTCTCATCG
TGGAAGGCAAGAGGGAAAAGAAGAAAGTAGAGAGGTTGACAATGCAAGTCTCTTCCTTACAAAGGGAGCCATTTACAATT
GCACAAGGAAAGGGGCAGAAACTTTGTGAAATTGAAAGGATACATTTCTTTCTGAGTAAGAAGAAAACAGATGAACTTAG
AAATCTACACAAGCTGCTTTACAATAGACCAGGCACAGTATCCTCATTAAAGAAGAATGTGGGTCAGTTTAGTGGTTTTC
CATTTGAAAAAGGAAGTATTCAGTATAAAAAGAAGGAAGAAATGTTGAAAAAATTTAGAAATGCCATGTTAAAGAGCATC
TGCGAGGTTCTTGATTTGGAGAGATCAGGTGTAAATAGTGAACTAGTGAAGAGGATCTTGAATTTCTTAATGCATCCGAA
GCCTTCTGGCAAACCGTTGCCAAAGTCTAAAAAGACTTCTAGTAAAGGCAGTAAGAAGGAACGCAACAGTTCTGGAACAA
CAAGGAAAGCGAAGCGAACCAAATATCCTGAAATTCTGTCAGATGAGTCTAGTAGTGATGAAGACGAAAAGAAAAACAAG
GAAGAGTCTTCAGAGGATGAAGATAAAGAAAGTGAAGAGGAGCCACCAAAAAAGACTTCCAAAAGAGAAAAACCTAAGCA
GAAAGCTGTTGCGAAAAGTAAGAAGTCTGTAAAAAGTGCTAATGTTAAGAAAGCAGACAGCAGCACCACCAAGAAAAATC
AGAACAGTTCCAAGAAAGAAAGTGAATCTGAGGATAGTTCAGATGATGAACCTTTAATTAAAAAATTGAAGAAACCGCCT
ACAGATGAAGAGTTAAAGGAAACAGTAAAGAAATTGTTGGCCAATGCTAACTTGGAGGAAGTCACAATGAAGCAGATTTG
TAAAGAGGTATATGAAAATTATCCTGCTTATGATTTAACTGAAAGAAAAGATTTCATAAAAACAACTGTTAAAGAACTAA
TTTCTTGA
ATGTCTTCGTCGGCTCCCGCTGCGGAGGGAGAGGGCACCACCGCCCAGCCCGCGTCCGAGAAGGAGCCCGACATGCCCGG
CCCGAGAGAGGAGAGCGAGGAGGAGGACGAAGACGACGAAGAGGAGGATGAAGAGGAGGAGAAAGAAAAGAGTCTCATCG
TGGAAGGCAAGAGGGAAAAGAAGAAAGTAGAGAGGTTGACAATGCAAGTCTCTTCCTTACAAAGGGAGCCATTTACAATT
GCACAAGGAAAGGGGCAGAAACTTTGTGAAATTGAAAGGATACATTTCTTTCTGAGTAAGAAGAAAACAGATGAACTTAG
AAATCTACACAAGCTGCTTTACAATAGACCAGGCACAGTATCCTCATTAAAGAAGAATGTGGGTCAGTTTAGTGGTTTTC
CATTTGAAAAAGGAAGTATTCAGTATAAAAAGAAGGAAGAAATGTTGAAAAAATTTAGAAATGCCATGTTAAAGAGCATC
TGCGAGGTTCTTGATTTGGAGAGATCAGGTGTAAATAGTGAACTAGTGAAGAGGATCTTGAATTTCTTAATGCATCCGAA
GCCTTCTGGCAAACCGTTGCCAAAGTCTAAAAAGACTTCTAGTAAAGGCAGTAAGAAGGAACGCAACAGTTCTGGAACAA
CAAGGAAAGCGAAGCGAACCAAATATCCTGAAATTCTGTCAGATGAGTCTAGTAGTGATGAAGACGAAAAGAAAAACAAG
GAAGAGTCTTCAGAGGATGAAGATAAAGAAAGTGAAGAGGAGCCACCAAAAAAGACTTCCAAAAGAGAAAAACCTAAGCA
GAAAGCTGTTGCGAAAAGTAAGAAGTCTGTAAAAAGTGCTAATGTTAAGAAAGCAGACAGCAGCACCACCAAGAAAAATC
AGAACAGTTCCAAGAAAGAAAGTGAATCTGAGGATAGTTCAGATGATGAACCTTTAATTAAAAAATTGAAGAAACCGCCT
ACAGATGAAGAGTTAAAGGAAACAGTAAAGAAATTGTTGGCCAATGCTAACTTGGAGGAAGTCACAATGAAGCAGATTTG
TAAAGAGGTATATGAAAATTATCCTGCTTATGATTTAACTGAAAGAAAAGATTTCATAAAAACAACTGTTAAAGAACTAA
TTTCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 45 .86 RPM |
| SRP017611_kidney | 90 .71 RPM |
| SRP017611_brain | 89 .35 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000018188 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000004470 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000019763 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_1583 | 68.50 | 52.27 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1791 | 83.27 | 67.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1851 | 83.59 | 86.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_1857 | 84.15 | 86.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000003869 retrocopies