Parental gene: | RPL4, ENSOCUG00000008794 |
| Aliases: | None |
| Description: | ribosomal protein L4 [Source:HGNC Symbol;Acc:10353] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 17:5896993..5901066(+) |
>ENSOCUG00000008794
GCCGCCGGGAGGAGAGGAGCGTGGCTCTCACCTCTCCCCGCCATGGCGTGTGCTCGTCCACTCATATCGGTGTACTCCGA
GAAGGGGGAGTCGTCCGGCAAAAATGTGACTTTGCCCGCCGTGTTCAAGGCTCCCATCCGGCCAGACATCGTGAACTTCG
TGCACACCAACCTGCGCAAGAACAACAGGCAGCCCTATGCCGTCAGTGAGCTGGCAGGTCACCAGACCAGTGCTGAGTCG
TGGGGTACTGGCAGAGCTGTGGCGCGAATTCCCAGAGTGCGAGGTGGCGGGACGCACCGATCCGGCCAGGGTGCCTTTGG
GAATATGTGCCGAGGAGGCCGCATGTTCGCACCAACCAAAACCTGGCGCCGTTGGCACCGGCGAGTGAACACGACCCAGA
AGCGGTACGCCATCTGCTCTGCCCTGGCTGCGTCGGCCTTGCCAGCGCTGGTCATGTCTAAAGGTCATCGTATTGAGGAA
GTGCCGGAGCTTCCTCTGGTGGTCGAAGATAAGGTTGAAGGCTACAAGAAGACCAAGGAGGCAGTTCTGCTGCTTAAGAA
ACTCAAGGCCTGGAATGACATCAAGAAGGTGTACGCCTCTCAGCGGATGAGGGCTGGCAAGGGCAAAATGAGAAACCGCC
GGAGGATCCAGCGCAGGGGCCCCTGCGTCATCTACAATGAGGACAACGGCATCGTCAAGGCCTTCCGGAACATCCCTGGG
ATCACTCTGCTCAACGTGACCAAGCTGAACATCCTGAAGCTCGCGCCCGGCGGGCACGTGGGGCGCTTCTGCATCTGGAC
GGAGAGTGCCTTCCGGAAGCTGGACGACTTGTACGGCACTTGGCGTAAAGCCGCGTCCCTCAAGAGCAACTACAACCTTC
CCATGCACAAGATGCTCAATACAGACCTCAGCAGAATCTTGAAGAGCCCAGAGATCCAGAGAGCGCTCCGAGCACCACGC
AAGAAGATCCATCGCCGCGTCCTGAAGAAGAACCCGCTGAAGAACCTGAGGATCATGTTGAAGCTGAACCCGTACGCGAA
GACCATGCGGCGCAACACCATCCTGCGGCAGGCCCGGAACCACAAGCTCCGCGTGGAGAGGGCGGCCGCGGCACTAGCAG
CCAAATCTGACCCGAAGGAGGCGCCAGCCAAGAAGAAGCCTGTGGTGGGGAAGAAG
GCCGCCGGGAGGAGAGGAGCGTGGCTCTCACCTCTCCCCGCCATGGCGTGTGCTCGTCCACTCATATCGGTGTACTCCGA
GAAGGGGGAGTCGTCCGGCAAAAATGTGACTTTGCCCGCCGTGTTCAAGGCTCCCATCCGGCCAGACATCGTGAACTTCG
TGCACACCAACCTGCGCAAGAACAACAGGCAGCCCTATGCCGTCAGTGAGCTGGCAGGTCACCAGACCAGTGCTGAGTCG
TGGGGTACTGGCAGAGCTGTGGCGCGAATTCCCAGAGTGCGAGGTGGCGGGACGCACCGATCCGGCCAGGGTGCCTTTGG
GAATATGTGCCGAGGAGGCCGCATGTTCGCACCAACCAAAACCTGGCGCCGTTGGCACCGGCGAGTGAACACGACCCAGA
AGCGGTACGCCATCTGCTCTGCCCTGGCTGCGTCGGCCTTGCCAGCGCTGGTCATGTCTAAAGGTCATCGTATTGAGGAA
GTGCCGGAGCTTCCTCTGGTGGTCGAAGATAAGGTTGAAGGCTACAAGAAGACCAAGGAGGCAGTTCTGCTGCTTAAGAA
ACTCAAGGCCTGGAATGACATCAAGAAGGTGTACGCCTCTCAGCGGATGAGGGCTGGCAAGGGCAAAATGAGAAACCGCC
GGAGGATCCAGCGCAGGGGCCCCTGCGTCATCTACAATGAGGACAACGGCATCGTCAAGGCCTTCCGGAACATCCCTGGG
ATCACTCTGCTCAACGTGACCAAGCTGAACATCCTGAAGCTCGCGCCCGGCGGGCACGTGGGGCGCTTCTGCATCTGGAC
GGAGAGTGCCTTCCGGAAGCTGGACGACTTGTACGGCACTTGGCGTAAAGCCGCGTCCCTCAAGAGCAACTACAACCTTC
CCATGCACAAGATGCTCAATACAGACCTCAGCAGAATCTTGAAGAGCCCAGAGATCCAGAGAGCGCTCCGAGCACCACGC
AAGAAGATCCATCGCCGCGTCCTGAAGAAGAACCCGCTGAAGAACCTGAGGATCATGTTGAAGCTGAACCCGTACGCGAA
GACCATGCGGCGCAACACCATCCTGCGGCAGGCCCGGAACCACAAGCTCCGCGTGGAGAGGGCGGCCGCGGCACTAGCAG
CCAAATCTGACCCGAAGGAGGCGCCAGCCAAGAAGAAGCCTGTGGTGGGGAAGAAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 394 .01 RPM |
| SRP017611_kidney | 744 .97 RPM |
| SRP017611_brain | 499 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005211 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000017309 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000007491 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000003055 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000337 | possible_ortholog | 3 retrogenes | |
| Felis catus | ENSFCAG00000012293 | possible_ortholog | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003695 | possible_ortholog | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000011809 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000016844 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000009657 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000000337 | possible_ortholog | 3 retrogenes | |
| Mus musculus | ENSMUSG00000032399 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012938 | possible_ortholog | 4 retrogenes | |
| Ochotona princeps | ENSOPRG00000007792 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006578 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000009378 | ortholog_one2many | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_630 | 61.81 | 50.26 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_631 | 95.10 | 78.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1134 | 98.49 | 50.77 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000008794 retrocopies