Parental gene: | USP12, ENSPPYG00000005232 |
| Aliases: | None |
| Description: | ubiquitin specific peptidase 12 [Source:HGNC Symbol;Acc:20485] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 13:26470644..26593493(-) |
>ENSPPYG00000005232
ATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATGGGCGCCAATGCTTCGGCATTAGAGAAAGAGAT
TGGTCCAGAACAGTTTCCGGTCAATGAGCACTATTTTGGATTAGTCAATTTTGGGAATACCTGCTACTGCAATTCAGTTC
TTCAAGCACTTTATTTTTGTCGTCCATTTCGGGAAAAAGTTCTTGCGTATAAGAGTCAACCTAGGAAAAAGGAGAGCCTT
CTTACATGCTTAGCAGATCTCTTCCATAGCATAGCCACTCAGAAGAAAAAGGTTGGAGTAATACCCCCTAAGAAGTTCAT
CACAAGATTACGGAAAGAAAATGAGCTTTTTGACAACTACATGCAACAAGATGCCCATGAATTCTTAAATTACCTACTAA
ATACAATTGCTGATATTTTACAAGAAGAGAGAAAGCAGGAAAAACAAAATGGTCGCTTACCTAATGGTAATATTGATAAT
GAAAATAATAACAGCACACCAGACCCAACGTGGGTTCATGAGATTTTTCAGGGAACATTAACTAATGAAACCAGATGTCT
TACTTGTGAAACTATAAGCAGCAAAGATGAAGATTTTTTAGACCTTTCTGTTGACGTGGAACAAAATACATCAATTACTC
ACTGCTTAAGGGGTTTCAGCAACACAGAAACTCTGTGCAGTGAATACAAGTATTACTGTGAAGAGTGTCGCAGCAAACAG
GAAGCACACAAACGGATGAAAGTTAAAAAACTGCCCATGATTCTAGCTCTACACCTGAAGAGATTTAAATATATGGATCA
ACTTCATCGATATACAAAACTCTCTTACCGGGTAGTTTTTCCTTTAGAACTTCGTCTATTTAACACTTCAGGTGATGCCA
CCAATCCAGACAGAATGTACGACCTTGTTGCTGTTGTGGTTCACTGTGGAAGTGGTCCCAATCGAGGCCATTATATTGCA
ATAGTTAAGAGTCATGATTTTTGGTTGTTGTTTGATGACGACATTGTAGAAAAAATAGATGCACAAGCTATTGAAGAATT
CTACGGGTTGACATCAGATATCTCAAAGAACTCTGAGTCTGGTTACATCCTTTTCTATCAGTCTCGGGACTGA
ATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATGGGCGCCAATGCTTCGGCATTAGAGAAAGAGAT
TGGTCCAGAACAGTTTCCGGTCAATGAGCACTATTTTGGATTAGTCAATTTTGGGAATACCTGCTACTGCAATTCAGTTC
TTCAAGCACTTTATTTTTGTCGTCCATTTCGGGAAAAAGTTCTTGCGTATAAGAGTCAACCTAGGAAAAAGGAGAGCCTT
CTTACATGCTTAGCAGATCTCTTCCATAGCATAGCCACTCAGAAGAAAAAGGTTGGAGTAATACCCCCTAAGAAGTTCAT
CACAAGATTACGGAAAGAAAATGAGCTTTTTGACAACTACATGCAACAAGATGCCCATGAATTCTTAAATTACCTACTAA
ATACAATTGCTGATATTTTACAAGAAGAGAGAAAGCAGGAAAAACAAAATGGTCGCTTACCTAATGGTAATATTGATAAT
GAAAATAATAACAGCACACCAGACCCAACGTGGGTTCATGAGATTTTTCAGGGAACATTAACTAATGAAACCAGATGTCT
TACTTGTGAAACTATAAGCAGCAAAGATGAAGATTTTTTAGACCTTTCTGTTGACGTGGAACAAAATACATCAATTACTC
ACTGCTTAAGGGGTTTCAGCAACACAGAAACTCTGTGCAGTGAATACAAGTATTACTGTGAAGAGTGTCGCAGCAAACAG
GAAGCACACAAACGGATGAAAGTTAAAAAACTGCCCATGATTCTAGCTCTACACCTGAAGAGATTTAAATATATGGATCA
ACTTCATCGATATACAAAACTCTCTTACCGGGTAGTTTTTCCTTTAGAACTTCGTCTATTTAACACTTCAGGTGATGCCA
CCAATCCAGACAGAATGTACGACCTTGTTGCTGTTGTGGTTCACTGTGGAAGTGGTCCCAATCGAGGCCATTATATTGCA
ATAGTTAAGAGTCATGATTTTTGGTTGTTGTTTGATGACGACATTGTAGAAAAAATAGATGCACAAGCTATTGAAGAATT
CTACGGGTTGACATCAGATATCTCAAAGAACTCTGAGTCTGGTTACATCCTTTTCTATCAGTCTCGGGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 26 .59 RPM |
| SRP007412_cerebellum | 22 .62 RPM |
| SRP007412_heart | 13 .46 RPM |
| SRP007412_kidney | 17 .57 RPM |
| SRP007412_liver | 12 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019344 | ortholog_one2one | 5 retrogenes | |
| Homo sapiens | ENSG00000152484 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000006269 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000021425 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000323 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000030639 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005727 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012960 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2110 | 71.14 | 79.46 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2705 | 91.37 | 83.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3672 | 93.30 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000005232 retrocopies