Parental gene:

LAPTM4B, ENSPPYG00000018771

Aliases:None
Description:lysosomal protein transmembrane 4 beta [Source:HGNC Symbol;Acc:13646]
Organism:Orangutan (Pongo abelii)
Coordinates:8:104172601..104226654(+)


>ENSPPYG00000018771
ATCATCAATGCTGTGGTACTATTGATTTTACTGAGTGCCCTGGCTGATCCAAATCAGTATCACTTTTCAAGTTCTGAACT
GGGAGGTGACTTTGAGTTCATGGATGATGCCAACATGTGCATTGCCATTGCGATTTCTCTTCTCATGATCCTGATATGTG
CTATGGCTACTTACGGAGCGTACAAGCAACGCGCAGCCTGGATCATCCCATTCTTCTGTTACCAGATCTTTGACTTTGCC
CTGAACATGTTGGTTGCAATCACCGTGCTTATTTATCCAAACTCCATTCAGGAATACATACGGCAACTGCCTCCTAATTT
TCCCTACAGAGATGATGTCATGTCAGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGA
CTTTTAAGGGTTACTTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGGCAGGAACTCCTCTGATGTCCTGGTT
TATGTTACCAGCAATGACACTACGGTGCTGCTACCCCCGTATGATGATGCCACTGTGAATGGTACTGCCAAGGAGCCGCC
GCCACCTTACGTGTCTGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .71 RPM
SRP007412_cerebellum 18 .97 RPM
SRP007412_heart 49 .79 RPM
SRP007412_kidney 63 .38 RPM
SRP007412_liver 48 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016959 possible_ortholog 3 retrogenes
Callithrix jacchus ENSCJAG00000031235 ortholog_one2many 3 retrogenes
Macaca mulatta ENSMMUG00000008926 ortholog_one2one 1 retrogene
Nomascus leucogenys ENSNLEG00000003756 ortholog_one2one 1 retrogene
Otolemur garnettii ENSOGAG00000000512 ortholog_one2one 3 retrogenes
Pan troglodytes ENSPTRG00000020448 ortholog_one2one 1 retrogene
Tursiops truncatus ENSTTRG00000003124 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_279 90.91 62.69
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2. retro_pabe_2311 85.94 65.80
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Download FASTA sequences of all ENSPPYG00000018771 retrocopies