Parental gene: | PCED1A, ENSSTOG00000016356 |
| Aliases: | None |
| Description: | PC-esterase domain containing 1A [Source:HGNC Symbol;Acc:16212] |
| Organism: | Squirrel (Ictidomys tridecemlineatus) |
| Coordinates: | JH393295.1:15900657..15905774(+) |
>ENSSTOG00000016356
ATGGTCTTCTGTCTGGAAAACGAGGTGCCGCACCGCCCGCTGCGAAGCGCCATGGTCCACTTCCAGGCCTCAGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATCCAGAGAGCTGTGTATAAGGACCTGGTGCTTCTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGTTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGTGAGCTGCACAACGGGACACAGTATCGCGAGGTCCGCCAGTTCTGCTCGGGTTCTGGCCACCACCT
TGTACGCTTCTACTTCCTCACCCGCGTTTACTCTGAGTACCTTGAGGACGTCCTGGAGGAGCTGACATATGGGCCTGCCC
CCGACTTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGGTATGGCCGTTGCTCAATGGAAAGCTACCGAGAGAAC
CTGGAACGAGTGTTTGTGCGCATGGACCAAGTGTTGCCAGACTCCTGTTTGCTGGTGTGGAACATGGCAATGCCCCTAGG
CAAACGCATCACTGGAGGTTTTCTTTTGCCAGAGCTTCAGCCACTGGCGGGCACTCTACGACGGGATGTAGTTGAGGGCA
ACTTCTACAGCGCTACACTGGCCGGGGACCATTGCTTCGATGTCCTGGACCTCCACTTTCATTTCCGGCATGCAGTACGG
CACCGCCATCGAGACGGTGTCCATTGGGACCAGCATGCACACCGCCACCTCTCACATCTGCTTCTGACCCATGTGGCTGA
TGCCTGGGGTGTGGAACTGCCCAAGCGTGACCATCCCCCTGACCCGTGGATTGAGGACTGGCCAGAGATGGATCATCCAT
TCCAGGGAAGCCATAGGCAGTCCCCAGACTTCGGGGAGCAGCTGGCCTTGCCTCCACCCCCACCCTCTCCTTTACCCCCT
CCCATGTCTTTTCCTTATCCTCTTCCTCAGCCCTCACCACCTCCCTTGTTCCCACCCCTGCCCCAGGATGCCCCTTTTTT
CCCAGGCCAGCCCTTTCCACCCCATGAATTCTTCAATTACAATCCAATGGAGGACTTCTCGATGCCACGATGTGGCCCTG
GAATGAACTTTGTGCCTGGCCCCCTGCCACCTCCAGTCCCTGGCCCTGTCTCCCATGGTCAGCACCGAGGCCCAGTGGTC
CACCGGGGAATGCCACGTTGTGTTCCCAACAGCCCCTACCATGTGCCAAGGATGGTGGGACCCTGTAGGCAACGGCTCAG
GCACTCAGACAGACTGATCCACACATACAAACTGGACAGACGGGGACATGCCCATTCGGGAACATGGCCTGGG
ATGGTCTTCTGTCTGGAAAACGAGGTGCCGCACCGCCCGCTGCGAAGCGCCATGGTCCACTTCCAGGCCTCAGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATCCAGAGAGCTGTGTATAAGGACCTGGTGCTTCTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGTTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGTGAGCTGCACAACGGGACACAGTATCGCGAGGTCCGCCAGTTCTGCTCGGGTTCTGGCCACCACCT
TGTACGCTTCTACTTCCTCACCCGCGTTTACTCTGAGTACCTTGAGGACGTCCTGGAGGAGCTGACATATGGGCCTGCCC
CCGACTTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGGTATGGCCGTTGCTCAATGGAAAGCTACCGAGAGAAC
CTGGAACGAGTGTTTGTGCGCATGGACCAAGTGTTGCCAGACTCCTGTTTGCTGGTGTGGAACATGGCAATGCCCCTAGG
CAAACGCATCACTGGAGGTTTTCTTTTGCCAGAGCTTCAGCCACTGGCGGGCACTCTACGACGGGATGTAGTTGAGGGCA
ACTTCTACAGCGCTACACTGGCCGGGGACCATTGCTTCGATGTCCTGGACCTCCACTTTCATTTCCGGCATGCAGTACGG
CACCGCCATCGAGACGGTGTCCATTGGGACCAGCATGCACACCGCCACCTCTCACATCTGCTTCTGACCCATGTGGCTGA
TGCCTGGGGTGTGGAACTGCCCAAGCGTGACCATCCCCCTGACCCGTGGATTGAGGACTGGCCAGAGATGGATCATCCAT
TCCAGGGAAGCCATAGGCAGTCCCCAGACTTCGGGGAGCAGCTGGCCTTGCCTCCACCCCCACCCTCTCCTTTACCCCCT
CCCATGTCTTTTCCTTATCCTCTTCCTCAGCCCTCACCACCTCCCTTGTTCCCACCCCTGCCCCAGGATGCCCCTTTTTT
CCCAGGCCAGCCCTTTCCACCCCATGAATTCTTCAATTACAATCCAATGGAGGACTTCTCGATGCCACGATGTGGCCCTG
GAATGAACTTTGTGCCTGGCCCCCTGCCACCTCCAGTCCCTGGCCCTGTCTCCCATGGTCAGCACCGAGGCCCAGTGGTC
CACCGGGGAATGCCACGTTGTGTTCCCAACAGCCCCTACCATGTGCCAAGGATGGTGGGACCCTGTAGGCAACGGCTCAG
GCACTCAGACAGACTGATCCACACATACAAACTGGACAGACGGGGACATGCCCATTCGGGAACATGGCCTGGG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000003863 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000025475 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000016497 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000002886 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000132635 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000016578 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000028662 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000005200 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000037773 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004701 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010833 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000013185 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000006834 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000007168 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003464 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_itri_783 | 70.63 | 59.20 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_itri_1190 | 61.32 | 53.66 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSTOG00000016356 retrocopies