RetrogeneDB ID: | retro_amel_282 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192375.1:1981165..1981370(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFC1 | ||
Ensembl ID: | ENSAMEG00000011040 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.33 % |
Parental protein coverage: | 92.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAPPALLRPFSKLLA-PTRLSSGSSARSKFYVRE-PPHDRPDWLKVGLTLGTSVFLWIYLIKQHNEDVLE |
MAP.ALL.....LLA...R..S.SS.R.K..V...PPH..P..L..GLTLGTSVFL.I.LIKQHNEDV.. | |
Retrocopy | MAPSALLH-LGRLLA<LARFLSRSSVRAKSWVGD<PPHGKPNCLEGGLTLGTSVFLQIHLIKQHNEDVIK |
Parental | YK |
.K | |
Retrocopy | KK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011040 | 2 retrocopies |
retro_amel_282 , retro_amel_805,
|
Bos taurus | ENSBTAG00000039582 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015639 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004800 | 11 retrocopies | |
Felis catus | ENSFCAG00000008548 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010459 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000006836 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009082 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023590 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001107 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007703 | 1 retrocopy |