RetrogeneDB ID: | retro_brap_53 | ||
Retrocopylocation | Organism: | Chinese cabbage (Brassica rapa) | |
Coordinates: | A09:35807654..35808139(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bra030855 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.14 % |
Parental protein coverage: | 79.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAEQGMEGS-QPVDLMKHPSGIIPTLQNIVSTVNLDCKLDLKSIALQARNAEYNPKRFAAVIMRIREPKT |
M..Q..EGS..PVDL..HPSGI.PTLQNIVSTVNLDCKLDLK.IALQARNAEYNPKRFAAVIMRIREPKT | |
Retrocopy | MSDQDFEGSSEPVDLINHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKT |
Parental | TALIFASGKMVCTGAKSEHFSKLAARKYARIV-QKLGFPAK-FKDFKIQNIVGSCDVK-FPIRLEGLAYS |
TALIFASG.MVCTGAK.E..SKLAARKYARI.......P.K.FKDFKIQNIV.SCDVK.FPI.LEGLAY. | |
Retrocopy | TALIFASGRMVCTGAKTEDSSKLAARKYARIYNSETWIPSK>FKDFKIQNIVASCDVK>FPIWLEGLAYY |
Parental | HSAFSSYEPELFPGLIYRMKQPK |
H.AF.SYEPE.FPGLIYR....K | |
Retrocopy | HHAFASYEPEMFPGLIYRIRGMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica rapa | Bra027434 | 2 retrocopies | |
Brassica rapa | Bra030855 | 1 retrocopy |
retro_brap_53 ,
|
Theobroma cacao | TCM_026453 | 1 retrocopy |