>retro_btau_1333
ATGGCCCGGCCAGCCTGGCGTTGGCGGACCCTGGAGCGGTGCCTGAGGGAGGTCGGTAAAGCCACTGACAGCCCAGAGTG
CTTCCTCACCATTCAAGATGAACTGGCATCAAAGTATACTTCTTTAACAAAAGTACTTTATGACTTTAATAAAGTACTAG
AGAATGACAGGAAACATGGGAGTCCTTTAGAAAAATTGATGATAAATAATTTCGATGATGAGCAGATTTGGCAACAGTTG
GAACTGCAAAATGAACCAATTTTACAGCACTTCCAGAGTGCAGTTAGTGAAACCATTGAAGATGAAGACATCAGTCTTCT
CCCAGAGAGTGAAGAGCAGGAGTGTGAAGAGGATATGATGGAGCTGGAGGCTGCTGGCCAGGAGGACCTGGAACAAGATT
TAGAGGAGGAGGAGGTGGAGGAAGCAGAGGAGGTGGAAGTGTCAGACCTGAGTGGTGATGATCCTGAAGCAGATGAGAGA
GCCAAAAACTCAAGCAAATTGGATCTGAGGAAAAGCCCAGATTTCAGCGATGAGGACTCTGATCTTGATTTTGATATCAG
CAAACTGGAACGTCAGAGCAAGGTGTAAAGCAGAGTGCCTAGGAAACCAACAAGTAGATGATAAATTCTTCAAGCTCTCT
GAGATGGAGACCTTTTTAGAAAACATGGAAAAAGAAGAGGAACAAAGAGATGACCAAGAGGAAGATGATATTGATTTTTT
TGAAGATGTGGATTCCAATGAAGATGAAGGAGGACTGTTTGGAGGCCAGGATCTTAAGTCAGGTAAAAGTTCCAGAAACC
TGAAATACAAAGATTTCTTTGATCCAGTTGAAAGTGATGAAGACGTAGCAAGTGTCCACGATGATGGGAATGAACTGGCT
TCAAATGAAGAGGAAGAGATTGCTGAAGGAGAAGAAAGCATTTCTGAGACGGATGAAGATGATGACCTTGAAGAAAGTGG
AGACAGTAAACAACGTAAAGAAACCTTGAAAAGAGTGACCTTTGCTCTGCCCAATGATGAGGACACTGAAGATACAAATG
TCTTAAATGTACAGAAAGACTCTGATGAAGTAAAATCCTCTTTTGAAAAAAGACAAGAAAAGATGAATGAAAAAATTGCA
TCTTTGGAAAAAGAGTTGTTGGAGAAGAAACCTTGGCAGCTTCAAGGAGAAGTGACAGCGCAGAAGCGGCCCGAGAACAG
CCTCCTGGAAGAGACCCTGCACTTCGACCACGCCGTGCGCATGGCACCTGTGATCACAGAGGAAACCACTCTCCAACTAG
AGGATATCATTAAGCAGAGGATAAAAGATCAGGCTTGGGATGATGTCGTACGCAAAGAAAAGCCTAAAGAGGATGCATTT
GAGTATAAAAAGCGTTTAACACTGGACCACGAAAAGAGTAAATTGAGCCTTGCTGAAATTTACGAACAGGAGTACATCAA
ACTCAACCAGCAAAAAACAGCAGAGGAAGAAAATCCAGAGCATGTAGAAATCCAGAAGATGATGGACTCCCTCTTCTTAA
AGTTGGATGTGCTCTCAAACTTCCACTTCATCCCCAAGCCACCTGTTCCAGAAATTAAAGTGGTATCAAATCTGCCCGCT
GTCACCATGGAGGAGGTTGCCCCTGTGAGTGTCAGTGACGCAGCCCTCCTGGCCCCAGAGGAGGTCAAGGAGAAAAATAA
AGCTGGAGATATAAAAACAGCTGCTGAGAAAACAGCTACAGAC
ORF - retro_btau_1333 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.78 % |
Parental protein coverage: |
84.26 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MARPAWRRRTLERCLREVGKATDSPECFLTIQDELASKFTSLTKVLYDFNKVLENDRKHGSPLKKLMINN |
| MARPAWR.RTLERCLREVGKATDSPECFLTIQDELASK.TSLTKVLYDFNKVLENDRKHGSPL.KLMINN |
Retrocopy | MARPAWRWRTLERCLREVGKATDSPECFLTIQDELASKYTSLTKVLYDFNKVLENDRKHGSPLEKLMINN |
|
Parental | FDDEQIWQQLELQNEPILQHFQSAVSETIEDEDISLLPESEEQECEEDVMELEAAGQEDLEQDLEEEEVE |
| FDDEQIWQQLELQNEPILQHFQSAVSETIEDEDISLLPESEEQECEED.MELEAAGQEDLEQDLEEEEVE |
Retrocopy | FDDEQIWQQLELQNEPILQHFQSAVSETIEDEDISLLPESEEQECEEDMMELEAAGQEDLEQDLEEEEVE |
|
Parental | EAEEVEVSDLSADDPEADERAKNSSKLDLRKSPDFSDEDSDLDFDISKLERQSKVQSRVPRKPTEKSI-V |
| EAEEVEVSDLS.DDPEADERAKNSSKLDLRKSPDF....SD.D.D..........QS.V......K...V |
Retrocopy | EAEEVEVSDLSGDDPEADERAKNSSKLDLRKSPDF----SDEDSDLDFDISKLERQSKV*SRVPRKPT>V |
|
Parental | DDKFFKLSEMETFLENMEKEEEQRDDQEEDDIDFFEDVDSDEDEGGLFGGQDLKSGKSSRNLKYKDFFDP |
| DDKFFKLSEMETFLENMEKEEEQRDDQEEDDIDFFEDVDS.EDEGGLFGGQDLKSGKSSRNLKYKDFFDP |
Retrocopy | DDKFFKLSEMETFLENMEKEEEQRDDQEEDDIDFFEDVDSNEDEGGLFGGQDLKSGKSSRNLKYKDFFDP |
|
Parental | VESDEDVASVQDDGNELASNEEEEIAEGEESISETDEDDDLEESGDSKQHKETLKRVTFALPNDEDTEDT |
| VESDEDVASV.DDGNELASNEEEEIAEGEESISETDEDDDLEESGDSKQ.KETLKRVTFALPNDEDTEDT |
Retrocopy | VESDEDVASVHDDGNELASNEEEEIAEGEESISETDEDDDLEESGDSKQRKETLKRVTFALPNDEDTEDT |
|
Parental | NILNVQKDSDEVKSSFEKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMA |
| N.LNVQKDSDEVKSSFEKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMA |
Retrocopy | NVLNVQKDSDEVKSSFEKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMA |
|
Parental | PVITEETTLQLEDIIKQRIKDQAWDDVVRKEKPKEDAFEYKKRLTLDHEKSKLSLAEIYEQEYIKLNQQK |
| PVITEETTLQLEDIIKQRIKDQAWDDVVRKEKPKEDAFEYKKRLTLDHEKSKLSLAEIYEQEYIKLNQQK |
Retrocopy | PVITEETTLQLEDIIKQRIKDQAWDDVVRKEKPKEDAFEYKKRLTLDHEKSKLSLAEIYEQEYIKLNQQK |
|
Parental | TAEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAVTMEEVAPVSVSDAALLAPEEV |
| TAEEENPEHVEIQKMMDSLFLKLD.LSNFHFIPKPPVPEIKVVSNLPAVTMEEVAPVSVSDAALLAPEEV |
Retrocopy | TAEEENPEHVEIQKMMDSLFLKLDVLSNFHFIPKPPVPEIKVVSNLPAVTMEEVAPVSVSDAALLAPEEV |
|
Parental | KEKNKAGDIKTAAEKTATD |
| KEKNKAGDIKTAAEKTATD |
Retrocopy | KEKNKAGDIKTAAEKTATD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .36 RPM |
17 .95 RPM |
ERP005899_muscle |
0 .05 RPM |
11 .51 RPM |
SRP017611_brain |
0 .00 RPM |
9 .96 RPM |
SRP017611_kidney |
0 .06 RPM |
16 .66 RPM |
SRP017611_liver |
0 .00 RPM |
13 .21 RPM |
SRP030211_testis |
0 .18 RPM |
36 .18 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1333 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1333 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1333 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.