RetrogeneDB ID: | retro_btau_219 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:94432193..94432409(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000047845 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5I | ||
Ensembl ID: | ENSBTAG00000017496 | ||
Aliases: | None | ||
Description: | ATP synthase subunit e, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q00361] |
Percent Identity: | 95.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVPPVQVSPLIKLGRYSALFLGMAYGAKRYNYLKPRAEEERRLAAEEKKKRDEQKRIERELAEAQEDTIL |
MVPPVQVSPLIKLGRYS.LFLGMAYGAKRYNYLKPRAEEE.RLAAEEK.KRDEQKRIERELAEAQEDTIL | |
Retrocopy | MVPPVQVSPLIKLGRYSTLFLGMAYGAKRYNYLKPRAEEEKRLAAEEKRKRDEQKRIERELAEAQEDTIL |
Parental | K |
K | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 9 .73 RPM |
ERP005899_muscle | 0 .05 RPM | 126 .48 RPM |
SRP017611_brain | 0 .14 RPM | 27 .77 RPM |
SRP017611_kidney | 0 .24 RPM | 55 .30 RPM |
SRP017611_liver | 0 .23 RPM | 28 .77 RPM |
SRP030211_testis | 0 .22 RPM | 53 .90 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016722 | 2 retrocopies | |
Bos taurus | ENSBTAG00000017496 | 2 retrocopies |
retro_btau_1222, retro_btau_219 ,
|
Canis familiaris | ENSCAFG00000023527 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001989 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008678 | 1 retrocopy | |
Felis catus | ENSFCAG00000029708 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011414 | 1 retrocopy | |
Mus musculus | ENSMUSG00000050856 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012271 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000064 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002962 | 1 retrocopy |