>retro_btau_793
GAACTCCCAGGCACTGTATCAGTGTTTGGGCTCGAGCTGTCCTGTCCTGGCAAAGTAGATTCTGAAGTTACGACACTAAA
TGCACCTCAACTTGACAGTAACTTCAAAAAGCTTCACAGTCTTAGAGTTGAATGAAGGAAAAGTTGCCATCCAGAAATTG
AGGTAGGAAAACTTCAGCCTTGGACAAAACCACTATCAGAAGAACCCATTTATGATCCTGTACATGCAGCCTTGTCTACA
GCCATGTCTACAGGTGTGTTTTATATCAGCCTAGGGATTTGCTGTCCAGGTATATTTCTTGTAGTACTAGTATTAGCTGT
TTTGCATCTTCATAGTGTGAAAAGGATTGAACTGGGAGATAGCATCAGCACCAGCAGTAGTTCCCAAGGGCTGTCTCAGT
CCCAGTCGTTCCCAGATGTCTCAGTATGTGAGAGGCAACACACCCAACAATACAGCTCCCATCTCCCGTTATCCAACCTT
GTGGCTAGAGGAGTACAACTTGAAAAGTGTCGCTCTTTTGGAGGCCAGAGCTTAGGTGAATGATACCAAAATATCTATCC
AGGGAGAGGAACTCAAAAGATATACTCTAAGAAGGTACCTTTTGGTGTACTTCCCATGGGGTTTATGTAGATGAATAATA
TCCAGATAAAGAGCAACAAGCATTTGTAAAAACAGTTAGAGATCAAGCTTCTGAAATTCAGGTGACCACCATGCTCCCTA
AAAGTTGTGAGCTACAAGATCACAGAAATCTTCCTATTAGCCATGTATGAACATAAGAAGGGGAAAAGCCCATGGTGGAT
TGCCTTACATGAATTGGGGGTATCTTAAATTGTTTTTATGACAGTGCAAATATGTAGAGGCAAATAGTCAGCAGGAAACT
TCTCAACAAAAGCTAGTTCACATGGCTGTTCAGATTGCCTGTGGAATGAGCTACCTGGTCAGAAGAGAAGTCTTCCACAA
AGACCTGGCTCCTAGAATCTCTGTCATTGATGACAACTTCATGTTAAGAGCAAAGCCAATCCCTCTCCAGAGTCTTGTTC
CCCATGGACTCTCACTGTCTGGGGAACAACAAAAACACGGGATCGATGGATGGCTTTTGAAAGTCTGGTTAATAATGAGT
TCTCCAGC
ORF - retro_btau_793 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.48 % |
Parental protein coverage: |
65.58 % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
10 |
Retrocopy - Parental Gene Alignment:
Parental | EVPRTLSAVFRVELSCTGKVDSEVMIL-MQLNLTVNSSKNFTVLNFKR-RKMCYKKLEEVK-TSALDKNT |
| E.P.T.S.VF..ELSC.GKVDSEV..L.M.LNLTV..SK.FTVL.....RK.C....E..K.TSALDK.T |
Retrocopy | ELPGTVS-VFGLELSCPGKVDSEVTTL>MHLNLTV-TSKSFTVLELNE<RKSCHPEIEVGK<TSALDKTT |
|
Parental | -SRT-IYDPVHAAPTT--STRVFYISVGVCCAVIFLVAIILAVLHLHSMKRIELDDSISASSSSQGLSQ- |
| ..RT.IYDPVHAA..T..ST.VFYIS.G.CC..IFLV...LAVLHLHS.KRIEL.DSIS.SSSSQGLSQ. |
Retrocopy | IRRT>IYDPVHAALSTAMSTGVFYISLGICCPGIFLVVLVLAVLHLHSVKRIELGDSISTSSSSQGLSQ> |
|
Parental | PS-TQTTQYLRADTPNNATPITSSSGYPTLRIEKNDLRSVTLLEAKAKVKDIAISRERITLK-DVLQEGT |
| PS..Q..QY.R..TPNN..PI...S.YPTL..E...L.SV.LLEA.A.V.D..IS.....LK.D.L.EGT |
Retrocopy | PSRSQMSQYVRGNTPNNTAPI---SRYPTLWLEEYNLKSVALLEARA*VNDTKISIQGEELK>DIL*EGT |
|
Parental | FGRIFHGILVDEKDPNKEKQAFVKTVKDTDQASEIQVTMMLTESCKLRGLHHRNLLPITNVCIEEGEKPM |
| F....HG..VDE..P.KE.QAFVKTV.D..QASEIQVT.ML..SC.L....HRNL.PI..V...EGEKPM |
Retrocopy | FWCTSHGVYVDE*YPDKEQQAFVKTVRD--QASEIQVTTMLPKSCELQD--HRNL-PISHV*T*EGEKPM |
|
Parental | VI-LPYMNWGNLKLFLRQCKLVEANNPQAISQQDLVHMAIQIACGMSYLARREVIHKDLAARNCVIDDT- |
| V..LPYMNWG.LKLFL.QCK.VEAN..Q..SQQ.LVHMA.QIACGMSYL.RREV.HKDLA.R..VIDD.. |
Retrocopy | VD<LPYMNWGYLKLFL*QCKYVEANSQQETSQQKLVHMAVQIACGMSYLVRREVFHKDLAPRISVIDDN< |
|
Parental | LQVKITDN-ALSRDLFPMDYHCL-GDNENRPVRWMALESLVNNEFSS |
| L.VK...N..LSR.LFPMD.HCL.G....R..RWMA.ESLVNNEFSS |
Retrocopy | LHVKSKAN<SLSRVLFPMDSHCL>GTTKTRD-RWMAFESLVNNEFSS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .22 RPM |
18 .10 RPM |
ERP005899_muscle |
0 .00 RPM |
23 .49 RPM |
SRP017611_brain |
0 .00 RPM |
12 .61 RPM |
SRP017611_kidney |
0 .00 RPM |
36 .33 RPM |
SRP017611_liver |
0 .00 RPM |
19 .93 RPM |
SRP030211_testis |
0 .12 RPM |
26 .51 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_793 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_793 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_793 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.