RetrogeneDB ID: retro_cfam_105

Retrocopy location

• Organism: Dog (Canis familiaris)
• Coordinates: 12:21224659..21224980(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSCAFG00000030849
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSCAFG00000028898
• Aliases: None
• Description: None

Sequence

>retro_cfam_105
ATGAATACAGCAATTTACAAAAGAGGGGGAAGGGAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAA
GAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGATTGGAGTCCAGAGAAATTA
G

Alignment

ORF - retro_cfam_105 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.55 %
• Parental protein coverage: 51.6 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KEERKKERKKKERKKERKKERKKKLKRKKKKERKKERKKERKKERKKERKKKERRKKEKKERKERKREKK
          K.....ER.KKERKKERKKERKK......KKERKKERKK.RKKERKKERKK...RKKEKKERKERK.E.K
Retrocopy KRGGREERRKKERKKERKKERKKE-RTERKKERKKERKK-RKKERKKERKKE--RKKEKKERKERKKERK

Parental  ERKKERKK-ERKKERKKERKKERKKERK
          ...KERKK.ERKKERKKERKKERKKERK
Retrocopy KERKERKKEERKKERKKERKKERKKERK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012049_cerebellum	0.00 RPM	0.00 RPM
SRP017611_brain	0.00 RPM	0.00 RPM
SRP017611_kidney	0.00 RPM	0.00 RPM
SRP017611_liver	0.00 RPM	0.00 RPM

ChIP-Seq

Canis familiaris was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_cfam_105 retrocopy.

TSS

Canis familiaris was not studied using FANTOM5 data.

Lab

retro_cfam_105 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_cfam_105 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000028898	2 retrocopies	retro_cfam_105 , retro_cfam_109,