RetrogeneDB ID: | retro_cfam_1706 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:62270904..62271218(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C19ORF70 | ||
Ensembl ID: | ENSCAFG00000018796 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.41 % |
Parental protein coverage: | 88.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | GSVAGGAVYLVYDQELLGPSD-KSQAVLQRA-EEVVP-PAMYQLSQYVCEQTGLKMPQLPAPPKFNFHF- |
G.VAG....LVYD...LGPS..KSQ.VLQ...E...P.P.M.Q..QY..EQT.LK.PQ.P.PPKFN.H.. | |
Retrocopy | GIVAGATIHLVYD*KFLGPSE<KSQTVLQKSKEVAPP<PVMSQFTQYRREQTSLKTPQTPVPPKFNSHI> |
Parental | RDTWNSGILTVMSALSVAPSKAREYSRDGWEYLKERIK |
....NSGI...M.A.SVAPSKA..YS..G.EYLKE.IK | |
Retrocopy | NKS*NSGIILLMLAFSVAPSKAPKYSKEG*EYLKEQIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 36 .50 RPM |
SRP017611_brain | 0 .00 RPM | 20 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 102 .62 RPM |
SRP017611_liver | 0 .00 RPM | 12 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018796 | 2 retrocopies |
retro_cfam_1706 , retro_cfam_756,
|
Callithrix jacchus | ENSCJAG00000017076 | 2 retrocopies | |
Felis catus | ENSFCAG00000011836 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000026050 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000028920 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001268 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006136 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000006583 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013386 | 1 retrocopy |