RetrogeneDB ID: | retro_cfam_2207 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:107357185..107357782(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000018971 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC37A3 | ||
Ensembl ID: | ENSCAFG00000003973 | ||
Aliases: | None | ||
Description: | solute carrier family 37, member 3 [Source:HGNC Symbol;Acc:20651] |
Percent Identity: | 94.5 % |
Parental protein coverage: | 76.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YSLAYACLKLVNYSFFFWLPFYLSNNFGWKEAEADKLSIWYDVGGIIGGTLQGFISDVLQKRAPVLALSL |
YSLAYACLKLVNYSFFFWL.FYLSNNFGWKEAEADKLSIWYDVGGIIGGTLQGFISD.LQKRAPVLALSL | |
Retrocopy | YSLAYACLKLVNYSFFFWLTFYLSNNFGWKEAEADKLSIWYDVGGIIGGTLQGFISDILQKRAPVLALSL |
Parental | LLAIGSLVGYSRSPNDKSINALLMAVTGFFIGGPSNMISSAISADLGRQELIQGSSEALATVTGIVDGTG |
LLAIGS.VGYSRSPNDKSINALLMAVTGFF.GGPS.MISSAIS.DLGRQELIQGS.EALATVTGIVDGTG | |
Retrocopy | LLAIGSPVGYSRSPNDKSINALLMAVTGFFTGGPSKMISSAISVDLGRQELIQGSIEALATVTGIVDGTG |
Parental | SIGAAVGQYLVSLIQDNLGWIWVFYFFILMTSCTILFISPLIVRETCYLMQRRQAHVLSE |
SIGAAVGQYLVSLIQDNLG..WVFYFFILMTSCTILFISPLIVRE.CYLMQR.QAHVLSE | |
Retrocopy | SIGAAVGQYLVSLIQDNLG-LWVFYFFILMTSCTILFISPLIVREICYLMQR*QAHVLSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 27 .51 RPM |
SRP017611_brain | 0 .00 RPM | 23 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .75 RPM |
SRP017611_liver | 0 .00 RPM | 8 .34 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012239 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000003973 | 1 retrocopy |
retro_cfam_2207 ,
|
Mus musculus | ENSMUSG00000029924 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010929 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009525 | 1 retrocopy |