RetrogeneDB ID: | retro_chof_100 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_1947:50737..51186(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HDHD2 | ||
Ensembl ID: | ENSCHOG00000009397 | ||
Aliases: | None | ||
Description: | haloacid dehalogenase-like hydrolase domain containing 2 [Source:HGNC Symbol;Acc:25364] |
Percent Identity: | 94.12 % |
Parental protein coverage: | 57.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAARRALKAV-LVDLSG-TLHIEDAAVPGAQEALKR-LRGASVKVRFVTNTTKESKQDLLERLKKLEFEI |
MAAR.ALKAV.LVDLS..TLHIEDAAVPGAQEA.KR.LRGASVKVRFVTNTTKESKQDLLERLKKLEFEI | |
Retrocopy | MAARHALKAV<LVDLSA<TLHIEDAAVPGAQEAFKR>LRGASVKVRFVTNTTKESKQDLLERLKKLEFEI |
Parental | SEDEIFTSLTAARNLVEQKQVRPMLLVDDRALPDFRGIQTSDPNAVVIGLAPEHFHYQFLNQAFRLLLDG |
SEDEIFTSLTAARNLVEQKQVRPMLLVDDRAL.DFRGIQTSDPNAVVIGLAPEHFHYQ.LNQAFRLLLDG | |
Retrocopy | SEDEIFTSLTAARNLVEQKQVRPMLLVDDRALRDFRGIQTSDPNAVVIGLAPEHFHYQILNQAFRLLLDG |
Parental | APLIAIHKARYYK |
APLIAIHKARYY. | |
Retrocopy | APLIAIHKARYYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011893 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009397 | 1 retrocopy |
retro_chof_100 ,
|
Macaca mulatta | ENSMMUG00000010999 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008527 | 1 retrocopy |