>retro_chof_1055
ATCCCCCTGGATCTCTACTCTTCAGCTGGCTCAGACAAGAGAAGGAAAAGGGGCAATCTGACCAGGGAATCTGTTCAGCT
TCTCCAGGGCTGACTGTATGAACACAAATACAATGTGTATCCCTCAGAGCAAAAGGAAGCATTATTATCCTAACAAACAC
ATCTATCCACACTACAGGTCTGTAACTGGTTCATCAATGCCCATTGCAGGCTCCTTCCTGACATGCTGAGAAAGGATGCC
AAAGATCCACATCAGTTCACATTTTCCCTCCATGGGGCCAAGATTTCTGAAGCTATCTCTGTGGAGTCAGCAGTAGACAT
CAGAAACGTCATGCCAGCTCTAGAGGAGAGCCCATTTCCTACCTGTACAGCCAGACCCAGCCCATTCCTAAGGAGGTCAC
TGTCTCCCAAGCCATCATCCCCAAGATCCATTTTGGCTCATCCTTCTGTGATCTGCCGTACCACTGTGATTACTTTGAAA
GATATGCCTTCCCCAATCTGCCAATCAATTGGTGAGGACAAAACACGAAT
ORF - retro_chof_1055 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.6 % |
Parental protein coverage: |
66.54 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | IPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR |
| IPLDL.SSAGS.KRR.RGNL..ESVQ.L...LYEH.YN.YPSEQ..ALLS.QTHLSTLQVCNWFINA..R |
Retrocopy | IPLDLYSSAGSDKRRKRGNLTRESVQLLQG*LYEHKYNVYPSEQKEALLS*QTHLSTLQVCNWFINAHCR |
|
Parental | LLPDMLRKDGKDPNQFTISRRGAKISEASSVEPAMGIKNFMPALEESPFHSCSVGPNPTLGRPLSPKPSS |
| LLPDMLRKD.KDP.QFT.S..GAKISEA.SVE.A..I.N.MPALEESPF..C...P.P.L.R.LSPKPSS |
Retrocopy | LLPDMLRKDAKDPHQFTFSLHGAKISEAISVESAVDIRNVMPALEESPFPTCTARPSPFLRRSLSPKPSS |
|
Parental | PGSILARPSVICHTTVTTLKDVPFPLCQSVGV-GQNTD |
| P.SILA.PSVIC.TTV.TLKD.P.P.CQS.G..GQNT. |
Retrocopy | PRSILAHPSVICRTTVITLKDMPSPICQSIGE<GQNTN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1055 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.