RetrogeneDB ID: | retro_chof_1155 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_21421:4656..5429(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL14EP | ||
Ensembl ID: | ENSCHOG00000012698 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 14 effector protein [Source:HGNC Symbol;Acc:26798] |
Percent Identity: | 87.26 % |
Parental protein coverage: | 99.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHAKIYIDRFED |
MMDPCSVGVQLRTTNECHKTY.TRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHAKIYIDRFED | |
Retrocopy | MMDPCSVGVQLRTTNECHKTYHTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHAKIYIDRFED |
Parental | LQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQIINGSVDIDSEDRQRRKPD |
LQKSCCDPFN.HK.L....LH.IDLDDATFLSAKFGRQLVPGWKLCPKCTQ.INGSVD.DSED.QRRKPD | |
Retrocopy | LQKSCCDPFNTHKLLVXXXLHGIDLDDATFLSAKFGRQLVPGWKLCPKCTQVINGSVDTDSEDHQRRKPD |
Parental | SDGRTAKALRSLQFTNP-GKQTEFAPETGKREKRRXXXXXXXXXXXQVIPAKSKVYDSQGLLIFSGMDLC |
SDGRTAKALRSLQF.N...KQTEF.PETGKREKRR...........QVIPAKSKVYDSQGLLIFSGMDLC | |
Retrocopy | SDGRTAKALRSLQFINS<RKQTEFSPETGKREKRRLTKNASAGSDRQVIPAKSKVYDSQGLLIFSGMDLC |
Parental | DCLDEDCLGCFYACPACGSTKCGAECRCDRKWLYEQIEIEGGEIIHNKH |
DCLDE.CLGCFYACPAC.STKCGAEC.CD.K.LYE.IEIEGGEIIHNKH | |
Retrocopy | DCLDEACLGCFYACPACVSTKCGAECHCDHK*LYEKIEIEGGEIIHNKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012417 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012698 | 1 retrocopy |
retro_chof_1155 ,
|
Felis catus | ENSFCAG00000028620 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011547 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017590 | 2 retrocopies | |
Mus musculus | ENSMUSG00000027122 | 1 retrocopy |