RetrogeneDB ID: | retro_chof_1162 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_215470:25..690(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTMR10 | ||
Ensembl ID: | ENSCHOG00000012336 | ||
Aliases: | None | ||
Description: | myotubularin related protein 10 [Source:HGNC Symbol;Acc:25999] |
Percent Identity: | 77.53 % |
Parental protein coverage: | 52.22 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | LVRMAFIKDV-LQQRKIDQRICNAITKSHPQRSDVYKSDLDKTLPNIQEIQAAFIKLKQ-LCVNEPFEET |
LVR.A.IKDV..QQRKI..RIC.AITKSHPQRSD..K..LDK.LP.IQEIQ.AF.KLKQ..C.NEPFEET | |
Retrocopy | LVRLALIKDV<MQQRKIN*RICDAITKSHPQRSDIHKLALDKILPIIQEIQVAFLKLKQ<KCANEPFEET |
Parental | EEKWLSSLENTRWLEYVRAFLKHSVELVHMLENKHLSVILQEEEGRDLSCFIASLIQVMLDPYFRTITGF |
.EKWLSSLE.T.WLEYVR.FLK.SVELV.MLE.KHLS.ILQEEEGRDLS.FIASL.QVMLDPYFRTITGF | |
Retrocopy | KEKWLSSLESTQWLEYVRVFLKCSVELV*MLESKHLSPILQEEEGRDLSFFIASLTQVMLDPYFRTITGF |
Parental | QSLIQKEWVMAGYQFLDRCNHLKRSEKES-PLF-LLFLDATWQLLEQYPAAFEFSEAYLVVLYDSTRISL |
QSLIQKE.VMA.Y.FLDRCNHL......S.P.F.LLFLDATWQLL.QYP..F.FSE..LVVLY.ST.ISL | |
Retrocopy | QSLIQKE*VMASYLFLDRCNHLEMGKRVS<PYF<LLFLDATWQLLKQYPVVFKFSET*LVVLYNSTHISL |
Parental | FGTFLFNCPHQRVKQST |
FG.FLFNCPHQ.VKQ.T | |
Retrocopy | FGNFLFNCPHQWVKQRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012336 | 1 retrocopy |
retro_chof_1162 ,
|
Monodelphis domestica | ENSMODG00000011784 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008851 | 1 retrocopy |