>retro_chof_1189
GGTGCTGGTGGGGGAGGGGACAGGCCATGACCACGAGTTCGTCTGCCACTGAGTCTCAGAAGGTCACGACCCCACCATAG
AAGATGCTTATGAAATCCAGGTCCGCATTGATGATGAGCCTTGCCATCCGGACATTTTGGATACAGCTGGACTGACAGAG
TTTACGGCCACGCGGAATCAGTATAGGAGGGCAGGAGAAGGGTTTGCCATCTGTTATTCTGTCAGGGATCGTCGAAGTTT
CTGTGACCTTCGGGAGTTGAAACAGCTTATTCATCGTGTTTGATGTACTGATGATACACCTGTGGTTCTTGTGGGAAACA
GGTCTGACCTGAAACAGCTAAGACAGGTTACCAGAGAAGAAGGATTGGCTTTGGCCCTAGAATTCAGCTGTCCCTTTTTC
GAGACATCTGCTGCAAAGTGCCACTACACTGATGATGTCTCCATATCCTTGTATGGGAGATACAGAGGAAAGAAAAGGAG
GCAGTACTGGCCATGGAGAAAAAATCTAAACCCTAAAGCAGTGTGTGGAAGAGGCTAAAATCACTGTTCCAGAAGAAGAG
AGATTCAGTAACT
ORF - retro_chof_1189 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
55.9 % |
Parental protein coverage: |
88.02 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | GAGGVGK-SAMTM-QFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEG |
| GAGG.G...AMT...F..H.....HDPTIEDAY..QVRID.EP...DILDTAG..EFTA.R.QY.R.GEG |
Retrocopy | GAGGGGD<QAMTT<EFVCH*VSEGHDPTIEDAYEIQVRIDDEPCHPDILDTAGLTEFTATRNQYRRAGEG |
|
Parental | FIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGLNLARDYNCAFFETSA |
| F.ICYSV.DR.SF......K.LI..V..T...P.VLVGN..DL.Q.RQV..EEGL.LA....C.FFETSA |
Retrocopy | FAICYSVRDRRSFCDLRELKQLIHRV*CTDDTPVVLVGNRSDLKQLRQVTREEGLALALEFSCPFFETSA |
|
Parental | ALRFCIDD-AFHGLVREIRKKESTPSL-MEKKLKRKDSLWKKLKGSLKKKRENMT |
| A.....DD...H.LV.EI..KE....L.MEKK.K...S.WK.LK....KKR...T |
Retrocopy | AKCHYTDD<CLHILVWEIQRKEKEAVLAMEKKSKP*SSVWKRLKSLFQKKRDSVT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1189 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.