RetrogeneDB ID: | retro_chof_125 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_266:35230..35567(+) | ||
Located in intron of: | ENSCHOG00000005797 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLR3G | ||
Ensembl ID: | ENSCHOG00000006306 | ||
Aliases: | None | ||
Description: | polymerase (RNA) III (DNA directed) polypeptide G (32kD) [Source:HGNC Symbol;Acc:30075] |
Percent Identity: | 93.04 % |
Parental protein coverage: | 50.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAGNKGRGRAAYTFNIEAVGFTRGEKLPDVVLKPPPLFPXXXYKPVPLKTGEGEDYMLALKQELRETMKR |
MAGNKGRGRAAYTFNIEAVGFTRGEKLPDVVLKPPPLFP...YKPVPLKTGEGED.MLALKQELRETMKR | |
Retrocopy | MAGNKGRGRAAYTFNIEAVGFTRGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEDCMLALKQELRETMKR |
Parental | MPFFMETPEE-KQDIERYSKRYMKVYKEEWVPDWRRL-PREMMPQ |
MPFFMETPEE.KQ..ERYSKRYMKVYKEEWVPDWRRL.PREMMPQ | |
Retrocopy | MPFFMETPEE<KQILERYSKRYMKVYKEEWVPDWRRL<PREMMPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006306 | 1 retrocopy |
retro_chof_125 ,
|
Callithrix jacchus | ENSCJAG00000010747 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008379 | 1 retrocopy | |
Homo sapiens | ENSG00000113356 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000266 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014954 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018972 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013749 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005560 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015624 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017068 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016260 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008664 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002278 | 2 retrocopies |