RetrogeneDB ID: | retro_chof_1283 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_249767:1218..1596(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUS4L | ||
Ensembl ID: | ENSCHOG00000006848 | ||
Aliases: | None | ||
Description: | dihydrouridine synthase 4-like (S. cerevisiae) [Source:HGNC Symbol;Acc:21517] |
Percent Identity: | 71.65 % |
Parental protein coverage: | 53.68 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | YANGIDINCGCPQRWAMAEGYGACLINKPELIQDMVKQVKNQVENPRFSVSIKIRIHDDLTRTVDLCRKA |
YAN.I.INCGCPQRWA.AE.YG.CLINKPEL...M.K.VKNQVENPR.S.SIKI.IHDDL.RT.D.C.KA | |
Retrocopy | YANRIYINCGCPQRWAVAESYGTCLINKPELVWGMMK*VKNQVENPRYSESIKI-IHDDLIRTTDFC*KA |
Parental | EATGVSWITVHGRTVEERHQPVHYDAIKIIKENLSIPVIA-GDIKSLE--AHVWQIT |
EAT.V..ITV.GR.VEER..PVH.DAIKIIKEN.S.PVIA.G..KSL.....V.QIT | |
Retrocopy | EAT*VY*ITVRGRSVEERDKPVHCDAIKIIKENMSLPVIANGNSKSLKEAENVCQIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006848 | 1 retrocopy |
retro_chof_1283 ,
|
Cavia porcellus | ENSCPOG00000002384 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013113 | 2 retrocopies |