RetrogeneDB ID: | retro_chof_1295 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_253615:1338..1967(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OLA1 | ||
Ensembl ID: | ENSCHOG00000005044 | ||
Aliases: | None | ||
Description: | Obg-like ATPase 1 [Source:HGNC Symbol;Acc:28833] |
Percent Identity: | 96.21 % |
Parental protein coverage: | 58.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | CKVKSWVIDQKKPVR-FFHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYD |
C....WVIDQKKPVR..FHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDY.RKKNKWLIKIKEWVDKYD | |
Retrocopy | CAKSIWVIDQKKPVR<LFHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYMRKKNKWLIKIKEWVDKYD |
Parental | PGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGT |
PGALVIPFSGALELKLQELSAEERQKYLEA.MTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGT | |
Retrocopy | PGALVIPFSGALELKLQELSAEERQKYLEASMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGT |
Parental | KAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYVVEDGDIIFFKFNTPQQPKK |
KAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYVVEDGDIIFFKFNTPQQPKK | |
Retrocopy | KAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYVVEDGDIIFFKFNTPQQPKK |
Parental | K |
K | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006970 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005044 | 1 retrocopy |
retro_chof_1295 ,
|
Callithrix jacchus | ENSCJAG00000007877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008681 | 1 retrocopy | |
Homo sapiens | ENSG00000138430 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022215 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025196 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009296 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005817 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016557 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012943 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012650 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010743 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005517 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000009660 | 2 retrocopies |