RetrogeneDB ID: | retro_chof_1318 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_26105:7809..8346(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSER1 | ||
Ensembl ID: | ENSCHOG00000008281 | ||
Aliases: | None | ||
Description: | oxidative stress responsive serine-rich 1 [Source:HGNC Symbol;Acc:16105] |
Percent Identity: | 73.26 % |
Parental protein coverage: | 63.36 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MKSEAKDGEEESLQTAFKKLRVDASGSIVSLSVGDSTSVRASVRTAADDTKPKTTCASKDSWHGSTRKSS |
.K..AKDGEEES.QT.FKKLRVDASG...SLSVGDST....SVR.A...T.....CASKD..HGSTRKSS | |
Retrocopy | VKFKAKDGEEESPQTSFKKLRVDASGLMASLSVGDST----SVR-ASVRTAAENPCASKDR*HGSTRKSS |
Parental | RGAVRTQRRRRSKSPVLHPPKFIHCSTITSSSNQLKHKSQTDSPDGSSGLGIS-SSKEFSAGECCTSPLD |
RGAVRTQ....SKS.VLH.PKF..CSTITSSSNQLK.KSQTDS.DGSSGLG.S...KEFSAGEC..SPLD | |
Retrocopy | RGAVRTQLH*CSKSSVLHSPKFKLCSTITSSSNQLKYKSQTDSTDGSSGLGFS<TPKEFSAGECFASPLD |
Parental | ANHTGAVVEPLRTSVPRLPSKSKKEDYS-EATRVSQASLKANDLSDF |
AN.TGAVV.PLRTSV.RLPSKS.K...S.EAT.VSQ.SLK.NDLSDF | |
Retrocopy | ANYTGAVVKPLRTSVSRLPSKS-KKEDS>EAT*VSQTSLKTNDLSDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008281 | 1 retrocopy |
retro_chof_1318 ,
|
Echinops telfairi | ENSETEG00000013561 | 1 retrocopy | |
Mus musculus | ENSMUSG00000035399 | 1 retrocopy |