RetrogeneDB ID: | retro_chof_1323 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_2624:1872..2330(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSCHOG00000001114 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 68.39 % |
Parental protein coverage: | 89.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | RFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGV |
RF..RV.C..Y...S....AP.P..P.KA..LGYKAKQ.YVI.RI.V..GGRK.P.PKGATYGKPV.HGV | |
Retrocopy | RFVPRVCC*YYHH-SLRSAAPHPA*PNKALSLGYKAKQVYVIHRI*VCHGGRKLPLPKGATYGKPVCHGV |
Parental | NQLKFARSLQSVAEERAGRHCGALR-VLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKH |
.QLKFA.SLQSVAEE.AG.H...LR..LNSYWVGEDSTYKFF..ILID.FHK..R.N.D.QWITKPVH.H | |
Retrocopy | HQLKFALSLQSVAEEQAGHHSRVLR<TLNSYWVGEDSTYKFFAFILIDSFHKTLRGNLDNQWITKPVHRH |
Parental | REMRGLTSAGRKSRG |
RE..GL..AG.KSRG | |
Retrocopy | REKCGLMTAGCKSRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001114 | 6 retrocopies |
retro_chof_1201, retro_chof_1253, retro_chof_1323 , retro_chof_2246, retro_chof_357, retro_chof_877,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies |