RetrogeneDB ID: | retro_chof_1383 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_27784:3815..4331(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000006159 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.64 % |
Parental protein coverage: | 64.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | MASRAVVGIFLLSA-LPL-LCLELRRGIPDLGIKDLVLLCGRIFLLLALLTLIISVTTSWLNSFKSSQVY |
.AS....GIF.LS...PL.LCLEL..GIPDLGIK.L.LLC..IFL.LALLTLII.V..S.LNSFKSSQVY | |
Retrocopy | VASCGILGIFFLSG<SPLPLCLELWSGIPDLGIKNLILLCSWIFLWLALLTLIIYVNISCLNSFKSSQVY |
Parental | LKEEEEEKNGKRQ-KLVLNRQQETQSEKASRYIEKVLKPHQEMKLKKLEERF-YQMSGETWKLSNGHKLG |
L....EE.......K......QE.Q..KASRYIE..LKPH.EMKLKKLE....YQM.G.TW.LS..HKLG | |
Retrocopy | L---KEEEKNEKR>KNLCEKTQEAQGQKASRYIEDILKPHREMKLKKLEMLL<YQMTGKTWNLSSSHKLG |
Parental | -GDEGLVLENA-SQTSETSNREAARRRNLPEPVTKLSRPPDQ |
.GD..LVL.NA....SETSNREAA.R..LP.PVTK.S.PP.Q | |
Retrocopy | <GDKDLVLGNA<QKSSETSNREAAKRLHLPKPVTKVS-PPEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001600 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000006159 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000016846 | 1 retrocopy |