RetrogeneDB ID: | retro_chof_1462 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_30007:793..1168(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COMMD10 | ||
Ensembl ID: | ENSCHOG00000008311 | ||
Aliases: | None | ||
Description: | COMM domain containing 10 [Source:HGNC Symbol;Acc:30201] |
Percent Identity: | 72.8 % |
Parental protein coverage: | 61.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FILEQAVYHNVKPAALQQQLQNIHLRQEKAEPFVIAWSTMGQETVEKFRQRILAPPRLETVGWQLNLQMA |
F.LEQA....V.P.ALQQ.L...HLRQ.KAE..V.AWS.MGQET.EKFRQR.LAP.RLETVG.QL.LQMA | |
Retrocopy | FSLEQAAFPKVRPGALQQRLEDVHLRQDKAETSVQAWSPMGQETAEKFRQRSLAPHRLETVGGQLSLQMA |
Parental | HSAQANLKSPQAVLQLGVSNEDSKSLEKVLMEFSHKELFDFYNKLETIQAQLDSL |
.SA.ANLKSPQA.L.LG..N.DSKSLEK.LMEFSHK.L..FYNKLET.QAQL.SL | |
Retrocopy | PSAPANLKSPQALLRLGGRNGDSKSLEKALMEFSHKLLLHFYNKLETTQAQLGSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008311 | 2 retrocopies |
retro_chof_1462 , retro_chof_1585,
|
Cavia porcellus | ENSCPOG00000020474 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011885 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006173 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010780 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000001698 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004061 | 1 retrocopy |