>retro_chof_1495
AATATAATTTCTACAGTAGAATTCACTCATTTTGGAGAATTACTGGCAACAGGAGATAAAGGTGTAGAGTTGTCATCTTT
CAACAGGAGCAGGAGAACAAAATCCAGTCTCATAGCAGAGGAGAATATAATGTTTACAGCACCTTCCAGAGCCATGAGCC
AGAATTTGACTACTCAAAAAGTTTAGAAATAGAAGATCAACAAAAGTAGGTGGTTGCCCCAGGAAAATGCTGCTCAGTTT
TTATTGTCTACCAATGATAAAACAATAAAATTATGGAAATCAGTGAAAGGGACAAAAGACCAGAAGGGTATAACTTGAAA
GAGGAAGATGGAAAGTATAGAGATCCTACTACAGTTACTACACTACATGTACCAGTCTTTAGGCCCATGGATCTAATGGT
TGAAACCAGCCATGAAGAATATTTGCCAGAGCTCATACGTATCACATCAACTCTATTTCTATAAATAGTAATTATGAAAC
ACTTAATCTGCAGATGATTTGTGGGTTAATCTTTGGCATCTGGAAATTACAGACAGAAGTTTTAATATTGTGGATATCAA
GCCTGCTAATATGGAAGAACTAACAGAGGTGATTACAGCAGCAGAATTTCATCCAAACAGCTGTAACACATTTGTACACA
GCAGCAGTAAAGGAACTATTCGGTTATGTGACATGAGAGCATCTGCCCTCTGTAATAGACATTCTAAACTGTTTGAAGAA
CCTGAAGATCCCAGTTTAACAGGTCATTTTTTTTCTGAAATCATCTCCTCTATTTCTGATGTAAAATTCAGCCATAGTGG
TCAATATATGATGACAAGAGACTATTTGTCAGTCAAAATTTGGGACTTAAATATGGAAAATAGGCCTGTGGAAACCTATC
AGGTTCATGAATACCTCAGAAGTAAATTTTGTTCACTGTATGAAAATGACTGCTTATTTGACAAATTTGAATTTTGTTGG
AATGGATCTGACAGTGTTGTTATGACTGGATCTTATAATAATTTCTTCAGAATGTTTGACAGGAACACAAAGCGAGCCAT
AACCCTAGAAGCATCATGGGAAAATAATATACCTCACATGGTTTTGAAGTCACACAAAGTCTGTGCAAGTGGCAAACAAA
AGAAAGATGAAATAAGTGTTGACAGTCTAGATTTCAACAAGAAAATACTTCATACAGCCTGGCACCCCAAGGAAAACATC
ATTGCTGTAGCAACTACAAACAATCTGTATATATTTCAAGACGAAGTGAAT
ORF - retro_chof_1495 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.12 % |
Parental protein coverage: |
82.32 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | DIISTVEFNHTGELLATGDKGG-RVVIFQREQESKNQVHRRG-EYNVYSTFQSHEPEFDYLKSLEIEEKI |
| .IISTVEF.H.GELLATGDKG..RVVIFQ..QE..N.......E.N...T..S...............KI |
Retrocopy | NIISTVEFTHFGELLATGDKGV<RVVIFQ--QEQENKIQSHS>EENIMFTAPSRAMSQNLTTQKV*K*KI |
|
Parental | NKIRWLPQQNAAYFLLSTNDKTVKLWK-VSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVE |
| NK.RWLPQ.NAA.FLLSTNDKT.KLWK..SERDKRPEGYNLK.E.G..RDP.T.TTL.VPV.RPMDLMVE |
Retrocopy | NKSRWLPQENAAQFLLSTNDKTIKLWK<ISERDKRPEGYNLKEEDGKYRDPTTVTTLHVPVFRPMDLMVE |
|
Parental | AT-PRRVFANAHTYHINSISVNSDYETYM-SADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAE |
| ...P.R.FA.AHTYHINSIS.NS.YET...SADDL..NLW..EIT..SFNIVDIKPANMEELTEVITAAE |
Retrocopy | TS<P*RIFARAHTYHINSISINSNYETLN<SADDLWVNLWHLEITDRSFNIVDIKPANMEELTEVITAAE |
|
Parental | FHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPS-NRSFFSEIISSISDVKFSHSGRYIMT |
| FHP..CNTFV.SSSKGTIRLCDMRASALC.RH.K.FEEPEDPS.......EIISSISDVKFSHSG.Y.MT |
Retrocopy | FHPNSCNTFVHSSSKGTIRLCDMRASALCNRHSKLFEEPEDPSLTGXXXXEIISSISDVKFSHSGQYMMT |
|
Parental | RDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRN |
| RDYL.VK.WDLNMENRP.ETYQVH.YLRSK.CSLYENDC.FDKFE..WNGSDSV.MTGSYNNFFRMFDRN |
Retrocopy | RDYLSVKIWDLNMENRPVETYQVHEYLRSKFCSLYENDCLFDKFEFCWNGSDSVVMTGSYNNFFRMFDRN |
|
Parental | TKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIF |
| TKR..TLEAS.EN..P...LK..KVC..GK..KDEISVDSLDF.KKILHTAWHP.ENIIAVA.TNNLYIF |
Retrocopy | TKRAITLEASWENNIPHMVLKSHKVCASGKQKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF |
|
Parental | QDKVN |
| QD.VN |
Retrocopy | QDEVN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1495 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.