>retro_chof_1540
GCAGGGCCACCCAGGCCCCTCTGCAGAGAGACCCCAGAGCCTGCCCCCCATTGCCCAGATCACAGGACAGGGGAATCTCA
AACCCTATAACATCCAAGATCACATACTTCAAGAGGAAGAATGTGGAAGAAGAGGATTTTACCCACCTTTTAGATGGTAG
CCATAAAATCATCTCAGTTTCGAGGAATTAGCTCACATCCTTCATTATGTCCTTAGAAAAACTAAAGTTTATCAATGATC
CTGAAATGTACCTCCAAAGATCTGTCCTTGTAAACAATTTGATGAAAAGGATCCATGGAGAAATTATCATGCAGAATAAC
TGGTGCTTTCCTGCGTGCTCTTTCAATGGCGCCTCTGCCCAGGAATGGTTTATGGCTCAAGACTGTCCATACCGAAAACG
ACCACGGGTGGCCAAAGAGGAGTGTGAAAAGTTTCATGCCTGCTGCTTTTACCAAGAATGTGGTGGTCACTACCTAAATT
TACCCCTTTCTGTCAATGCTAATGTT
ORF - retro_chof_1540 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.29 % |
Parental protein coverage: |
68.88 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | AGP-AQAPLQGDRGARPPLAGSHYRGISNPITTSKITYFKRKYVEEEDFHPPLSSCSHKTISV-FEERAH |
| AGP..QAPLQ.D..A.PPL..S..RGISNPIT.SKITYFKRK.VEEEDF...L...SHK.ISV.FEE.AH |
Retrocopy | AGP<TQAPLQRDPRACPPLPRSQDRGISNPIT-SKITYFKRKNVEEEDFTHLLDG-SHKIISV<FEELAH |
|
Parental | ILY-MSLEKLKFIDDPEVYLRRSVLINNLMKRIHGAIIMQSNW-FPACSFNGASA-EWLMAENCPHGK-P |
| IL..MSLEKLKFI.DPE.YL.RSVL.NNLMKRIHG.IIMQ.NW.FPACSFNGASA.EW.MA..CP..K.P |
Retrocopy | ILH>MSLEKLKFINDPEMYLQRSVLVNNLMKRIHGEIIMQNNWCFPACSFNGASAQEWFMAQDCPYRKRP |
|
Parental | KVAKEEC-KFHACCFYQECGG-YVNFPLSVNAKV |
| .VAKEEC.KFHACCFYQECGG.Y.N.PLSVNA.V |
Retrocopy | RVAKEECEKFHACCFYQECGGHYLNLPLSVNANV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1540 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.