>retro_chof_1563
ATGGGCAGAGCAGAACCTCTAGAAGGAAAGATGACTGCCCAGGATCCCTCAGATCTGTGGAGCAGATTGGATGGAGAAGT
TGAGCTGCTCCGAGACTTGGGATGTTATCATGGCAATCTCACCCGCCAAGCAGCAGAAGCTCTTCTCTCAAATGGATCTG
ATGGAAGCTACCTTCTAAGGGACAGTAACAAAAGGACCAGGCTGTACTCTCTCTCCGTAACAGCCAAAGACTCTGTCAAA
CATTTTCATGTTGAATATACTGGATATTTATTTAAATTTGGCTTTAATGAATTCTCATCTTTGAAGGATTTTGTCAAGCA
TTTTGCAAACCAGCCTCTGATTGGAAGCAAAACAGGCACTCTGATTGTTCTGAAACATCCTTATCCAAGAAAAGTGGAGG
AACCTTCCATTTATGAATCCATCCACGATTACACAGCAATGCAAACAGGAAGAATGGAAAATGACCTCGTGCCTATGGCT
CCTTCTCTGGGTACCAAAGTTGTTTACCTCATCAAACAAGGGGGCCTAGTCAAG
ORF - retro_chof_1563 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.8 % |
Parental protein coverage: |
63.93 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MGRAEPLEGKMTAQDPSDLWSRSDGDAEEFXXXXWYHGNSTRHAAEALLLSNGSDGSYLLRDSNERTGLY |
| MGRAEPLEGKMTAQDPSDLWSR.DG..E.......YHGN.TR.AAEALL.SNGSDGSYLLRDSN.RT.LY |
Retrocopy | MGRAEPLEGKMTAQDPSDLWSRLDGEVELLRDLGCYHGNLTRQAAEALL-SNGSDGSYLLRDSNKRTRLY |
|
Parental | SLSVRAEDSVQHFHVEYTGYSFKFGFNEFSSLKDFVKHFANHPLIGSETGTLIVLKHPYPRKVEEPSIYE |
| SLSV.A.DSV.HFHVEYTGY.FKFGFNEFSSLKDFVKHFAN.PLIGS.TGTLIVLKHPYPRKVEEPSIYE |
Retrocopy | SLSVTAKDSVKHFHVEYTGYLFKFGFNEFSSLKDFVKHFANQPLIGSKTGTLIVLKHPYPRKVEEPSIYE |
|
Parental | SVRVHTAMQTGRTENDLVPTAPSLGTKEGYLIKQGGLVK |
| S....TAMQTGR.ENDLVP.APSLGTK..YLIKQGGLVK |
Retrocopy | SIHDYTAMQTGRMENDLVPMAPSLGTKVVYLIKQGGLVK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1563 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.