RetrogeneDB ID: | retro_chof_161 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_361:222740..223039(+) | ||
Located in intron of: | ENSCHOG00000010869 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC2 | ||
Ensembl ID: | ENSCHOG00000004306 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 2 [Source:HGNC Symbol;Acc:24925] |
Percent Identity: | 58.82 % |
Parental protein coverage: | 67.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQK-VGKLAATAVGGGFFLLQLANHTG |
E.A....WW...FG..S.P..EKYSVATQ...G.VTGWC.GF.FQK.VGKLAATAVGGG.FLLQ.A.H.G | |
Retrocopy | EYARRHHWWIRVFGHSSRPMVEKYSVATQIVMGRVTGWCAGFLFQK<VGKLAATAVGGG-FLLQIASHSG |
Parental | YIKVDWQRVEKDMKKAK----EQLKIHKSNQI |
Y....W.RVEKD..KAK.....Q.K.H....I | |
Retrocopy | YVQINWKRVEKDVNKAKRLRNKQIKQHLKSTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016977 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004306 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000004287 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000013156 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013817 | 2 retrocopies | |
Homo sapiens | ENSG00000165775 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000015289 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007776 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010248 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016484 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031198 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014443 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000033461 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000020897 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000041852 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013552 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000024066 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000012817 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007801 | 2 retrocopies |