RetrogeneDB ID:

retro_chof_1627

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_34537:9166..9562(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ZDHHC20
Ensembl ID:ENSCHOG00000012155
Aliases:None
Description:zinc finger, DHHC-type containing 20 [Source:HGNC Symbol;Acc:20749]


Retrocopy-Parental alignment summary:






>retro_chof_1627
ATCAGCGTCCTGTCACTTTTCAGCTATCACTGCTGGCTGGTTGGAAAAAATCGAACAACAATAGAATCATTCCGTGCACC
CACATTTTCATATGGACCTGATGGAAATGGTTTCTCTCTTGGATACAGTAAAAATTGGAGACAAGTCTTTCGTGATGAAA
AGAAATATTGGCTACTTCCAGTATTTTCAAGCTTGGGTGATGGTTGCAGTTTTCCAACTCGCCTTGTTGGGATGGACCCA
GAACAAGCTTCTGTTACAAGCCAAAACGAATATGCCAGAAGTGTTGGATCAAATCAAACCTTTCCTATCAAACCACTTAG
TGAATCAAAAAACCGATTATTGGACAGTGAATCTCATTGGACAGAGAATGGATCTGAAGAAGGCAGCATCAGATCA

ORF - retro_chof_1627 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.48 %
Parental protein coverage: 60.27 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalISVLSLFSYHCWLVGKNRTTIESFRAPTFSYGPDGNGFSLGYSKNWRQVFGDEKKYWLLPVFSSLGDGCS
ISVLSLFSYHCWLVGKNRTTIESFRAPTFSYGPDGNGFSLGYSKNWRQVF.DEKKYWLLPVFSSLGDGCS
RetrocopyISVLSLFSYHCWLVGKNRTTIESFRAPTFSYGPDGNGFSLGYSKNWRQVFRDEKKYWLLPVFSSLGDGCS
ParentalFPTRLVGMDPEQASVTSQNEYARSVGSNQTFPVKPLSESKNRLLDSESHWTENGSEEGSIRS
FPTRLVGMDPEQASVTSQNEYARSVGSNQTFP.KPLSESKNRLLDSESHWTENGSEEGSIRS
RetrocopyFPTRLVGMDPEQASVTSQNEYARSVGSNQTFPIKPLSESKNRLLDSESHWTENGSEEGSIRS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1627 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000012155 2 retrocopies
retro_chof_1627 , retro_chof_2008,
Cavia porcellus ENSCPOG000000114891 retrocopy
Equus caballus ENSECAG000000164651 retrocopy
Homo sapiens ENSG000001807761 retrocopy
Gorilla gorilla ENSGGOG000000004352 retrocopies
Macaca mulatta ENSMMUG000000073731 retrocopy
Pongo abelii ENSPPYG000000052011 retrocopy
Pan troglodytes ENSPTRG000000056951 retrocopy
Tarsius syrichta ENSTSYG000000030131 retrocopy



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