RetrogeneDB ID: | retro_chof_1721 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_366401:27..485(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LYPLAL1 | ||
Ensembl ID: | ENSCHOG00000002210 | ||
Aliases: | None | ||
Description: | lysophospholipase-like 1 [Source:HGNC Symbol;Acc:20440] |
Percent Identity: | 94.16 % |
Parental protein coverage: | 64.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ISDDCPEHLESIDA-MCQVLTDLINEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFL |
....CPEHLESID.....VLTDLINEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFL | |
Retrocopy | VGSHCPEHLESIDG<RRRVLTDLINEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFL |
Parental | NKTSAVYQALQKTDGVIPELFQCHGTADELVLHSWGEETNLMLKSLGVSTNFYSLPNVYHDLSKTELEKL |
NKTSAVYQALQKTDGVIPELFQCHGTADELVLHSWGEETNLMLKSLGVSTNFYSLPNVYHDLSKTELEKL | |
Retrocopy | NKTSAVYQALQKTDGVIPELFQCHGTADELVLHSWGEETNLMLKSLGVSTNFYSLPNVYHDLSKTELEKL |
Parental | KSWILKKLPGEVEK |
KSWILKKLPGEVEK | |
Retrocopy | KSWILKKLPGEVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002210 | 1 retrocopy |
retro_chof_1721 ,
|
Dasypus novemcinctus | ENSDNOG00000001461 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004004 | 1 retrocopy |