RetrogeneDB ID: | retro_chof_1729 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_37026:9229..9652(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM11 | ||
Ensembl ID: | ENSCHOG00000007826 | ||
Aliases: | None | ||
Description: | RNA binding motif protein 11 [Source:HGNC Symbol;Acc:9897] |
Percent Identity: | 78.72 % |
Parental protein coverage: | 66.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | GIRLYGRPINVQYRFGSSYSSEPTNQSFENCVKTNLHSYRNEEVVVRSSFPMQSLPVNNVTLPQDYFFFQ |
GI..YGR.INV.Y..GSS..S.PTNQSFENCVKTN.HSYRNEEVV.RSSFPMQ.LP.NN..LPQ.Y.F.Q | |
Retrocopy | GICVYGRSINVEY*LGSSCFSKPTNQSFENCVKTNSHSYRNEEVVGRSSFPMQFLPINNPALPQEYCFIQ |
Parental | KMQWHAYNPMWQLPYYEMTAPLPNSPSLSSSLNHVPELEAGPSSYEWTHQPPSDSDLYQINKQKRQKQTS |
KM...AYNPMW.LPYYEMTAPLPNSPS.SSSLN.VPELE.GPSS.EWTHQ..SDSD.YQ.NKQKRQKQTS | |
Retrocopy | KM**LAYNPMWLLPYYEMTAPLPNSPSPSSSLNRVPELEVGPSSSEWTHQQLSDSDIYQMNKQKRQKQTS |
Parental | D |
D | |
Retrocopy | D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007826 | 2 retrocopies |
retro_chof_1729 , retro_chof_922,
|
Choloepus hoffmanni | ENSCHOG00000012747 | 1 retrocopy |