RetrogeneDB ID: | retro_chof_1817 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_39213:5145..5642(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MXI1 | ||
Ensembl ID: | ENSCHOG00000006556 | ||
Aliases: | None | ||
Description: | MAX interactor 1, dimerization protein [Source:HGNC Symbol;Acc:7534] |
Percent Identity: | 70.52 % |
Parental protein coverage: | 86.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NNGSSNTTPANKSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTT-LGLLNKAKAHIKKLEEVERKS |
N..SSNT...N.ST..ELEKN..AHL....E.L.VLIPLG.DCTRH.T.LGLLNKAKAHIKKLEE.ERKS | |
Retrocopy | NSRSSNTGTTNRSTNEELEKNQPAHLHP--EYLQVLIPLGRDCTRHAT>LGLLNKAKAHIKKLEEAERKS |
Parental | QHQLENLEREQRFLKRRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVEST-EFSHGEVDNIS |
QHQLEN.E..QRFLK..LE.LQGPQE.E.IRMDS.GSTIS.D.SDS.RE..E.DV....EFSHGE.DNI. | |
Retrocopy | QHQLENFE*GQRFLKG*LEKLQGPQETEQIRMDSTGSTISLDHSDSKRE--EIDVGVE>EFSHGEMDNI- |
Parental | TTSISDIDDHSSLQSIGSDEGYSSASVKLSFTS |
.TSISD..DHSSLQ.I.S.EGYS..SV.L.FTS | |
Retrocopy | -TSISDTEDHSSLQGIRSKEGYSRTSVTLPFTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003047 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006556 | 2 retrocopies |
retro_chof_1350, retro_chof_1817 ,
|
Cavia porcellus | ENSCPOG00000022901 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002479 | 2 retrocopies | |
Mus musculus | ENSMUSG00000025025 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022128 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003400 | 2 retrocopies |