>retro_chof_1900
GAAAACAATATGCTTTCCATGTTTAAAAAGCTGAAAAACCTGGATCTGCAACAGAATGAGATCTCCAAAATTGAAAGTGA
GGCTTTCTTTGTTTTAAGCAAACTCGCCACCCTCTTACTGCAGCACAACCAGATCAAAGTCTTGATGGAAGAGCTGTTCA
TTTCTACATCTCTCCTGAGCTACCTGCGTCTTTATGACAACCCTTGGCACTGTACATGTGAGATCGAAATGCTCATCTCA
ATGCTGCAGATTCCAAGGAATTGGAATTTGGAGAACTATGCCAAATGTGAAAACCCACAAGAACTAAAGAATTAAAAAAC
TGTGGCAGATAAAACCTAAACAGTTATGCAGTGAAGGAGAAAAGGAACAATTAGACTCCAAACCCAAAGTACGAGGGAGA
CCCCCAGTCACCAAGCCTGGGGTGGCCTCTACTGTTTGCCACAATTATGTGTTTCCATACAAATGCTGGACTGCAAAAAA
AAAAAAAAGTTGGAGAAAGTTCCAAACAACATCCCTCCAGATATTATTAAACTTGACTTATCACACAGTAAGATCAACCA
GCTTTGACCCAAGGAATTTGAAGGTGTTCATGAGCTAGAGAAATTAAATCTCAGTAGCAATGGCATTGAATTCATAGATC
CTGCTGCTTTCTCAGGGCTTACTCACTTTGAAGAGTTAGATTTATCAAACAACAGTCTGCAGAACTTTGAACATGGAATA
TTAGAAGACTTGTATTTTTTGAAACGTTTTTGGCTCAGAGATAACCCTTGGAGATGTGACTACAACATCCACTACCTCTA
TTACTGGTTAAAGCACCACTACAATATCCACAATAACAGCCTGGAATGCAAAGTGCCTGAAGAATGCAAAGGGTGGTTTG
TGGGGAGATATGTTCAGAGTTACTTTGAAGAATGTGGCAAAGACAAGTTACCAGCATACCCTGAAACATCTGACCAGGAT
ACTGAAGATGACTAATAGGAAAAAAATACATAGGGATCATATAACAAAG
ORF - retro_chof_1900 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.94 % |
Parental protein coverage: |
77.75 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | KNNMFSKFKKLKSLDLQQNEISKIESEAFFGLSKLTTLLLQHNQI-VLTEEMFIYTTLLSYLLLCDNPWH |
| .NNM.S.FKKLK.LDLQQNEISKIESEAFF.LSKL.TLLLQHNQI.VL.EE.FI.T.LLSYL.L.DNPWH |
Retrocopy | ENNMLSMFKKLKNLDLQQNEISKIESEAFFVLSKLATLLLQHNQIKVLMEELFISTSLLSYLRLYDNPWH |
|
Parental | C--EIEMLISVLQIPRNQNLGNYAKCKSPQELKN-KKLLQIKSEQLCNEGEKEQLDPKPQVSGRPPVIKP |
| C..EIEMLIS.LQIPRN.NL.NYAKC..PQELKN.KKL.QIK..QLC.EGEKEQLD.KP.V.GRPPV.KP |
Retrocopy | CTCEIEMLISMLQIPRNWNLENYAKCENPQELKN>KKLWQIKPKQLCSEGEKEQLDSKPKVRGRPPVTKP |
|
Parental | EVDSTLCHNYVFP-IQTLDCKREX-LKKVPKNIPPDIVKLDLSYNKINQLRPKEFEDVHELRKLNLSSNG |
| .V.ST.CHNYVFP.IQ.LDC...X.L.KVP.NIPPDI.KLDLS..KINQL.PKEFE.VHEL.KLNLSSNG |
Retrocopy | GVASTVCHNYVFP<IQMLDCXXXXXLEKVPNNIPPDIIKLDLSHSKINQL*PKEFEGVHELEKLNLSSNG |
|
Parental | IEFIDPAAFSGLTHLEELDLSNNSLQNFDYGVLEDLYFLKLLWLRDNPWRCDYNIHYLYYWLKHHYNVHY |
| IEFIDPAAFSGLTH.EELDLSNNSLQNF..G.LEDLYFLK..WLRDNPWRCDYNIHYLYYWLKHHYN.H. |
Retrocopy | IEFIDPAAFSGLTHFEELDLSNNSLQNFEHGILEDLYFLKRFWLRDNPWRCDYNIHYLYYWLKHHYNIHN |
|
Parental | NGLECKIPEEYKGWFVGKYVRSYFEECPKDKVPAYPETFDQDTEDD-EWEKIHRDHVAK |
| N.LECK.PEE.KGWFVG.YV.SYFEEC.KDK.PAYPET.DQDTEDD....KIHRDH..K |
Retrocopy | NSLECKVPEECKGWFVGRYVQSYFEECGKDKLPAYPETSDQDTEDD>NRKKIHRDHITK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1900 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.