RetrogeneDB ID: | retro_chof_1999 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_449:30965..31714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SBDS | ||
Ensembl ID: | ENSCHOG00000003795 | ||
Aliases: | None | ||
Description: | Shwachman-Bodian-Diamond syndrome [Source:HGNC Symbol;Acc:19440] |
Percent Identity: | 92.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKED |
MSIFTPTNQ.RLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKED | |
Retrocopy | MSIFTPTNQVRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKED |
Parental | LISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV-PETKRPYTVILIERAMKDI |
LISAFGTDDQTEICKQILTKGEVQVSDKERHTQL.QMFRDIATIVADKCV.PETKRPYTVILI.RAMKDI | |
Retrocopy | LISAFGTDDQTEICKQILTKGEVQVSDKERHTQLGQMFRDIATIVADKCVNPETKRPYTVILIVRAMKDI |
Parental | HXXXXXXXXXXXXALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV-IESEDYSQQLEIV |
H............ALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV...SEDYSQQLEIV | |
Retrocopy | HYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV<YKSEDYSQQLEIV |
Parental | CLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE |
CLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE | |
Retrocopy | CLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003795 | 2 retrocopies |
retro_chof_1999 , retro_chof_623,
|
Callithrix jacchus | ENSCJAG00000004283 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016904 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008763 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025337 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009011 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008721 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000000888 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022203 | 1 retrocopy |