>retro_chof_2144
AAGTTGAAGCATTATGCATGGAAGAGGCGATGGTTTTTGTTATGCAGTGACCGTTTAACTGGAGATCCAGATGTCTTGGA
ATATTACAAAAATGATCATGACAAGAAGCCTATTCGCATTGTTGATTTAAATTTATGTCAGCAAGTCGATGCAGAATTGA
CATTTAACAAAAAAGAGTTTGAAAACAGCTACATTTTTGACACCAACACTGTTGACCAGTTTTTCTGCTTGGTAGCCGAC
AGTGAAGAGGAGATAAGTGGATTCCTTGTATTTGTGACATCTGTGCGTTTAATCCTACAGAAGAAGATGCTGTGAAGCCA
CCTGGCAACTCCTTACAAGCACCAGCTGATTTATCTTCAGCTGTAAATACAGTCTTGTCGTCCACCCGGGTGGATTCTTC
CACGGCTACTTTACCTTCTGCATATCAGCTAATTAACCTCCCACCACACCTGGAAACTGGTAGCATCCATGAGGATCCTC
AAGACTGATCCTCTTACTAATCAACTCTCAAAGCAAGAAGACTGAACCCACAAGAACACATGCTGATCCTGCAAAATCCA
CCTCCTCTGAAATAGCTACAACCATAATGTCCCTTCTTATAAAAATCCTGCTTCCTTCCTGAACAAACAAGGAGTGAATG
GCTTTTTTTTTCAGCAGCAAATGATGTGTGACTGTCCACTATCACGTACTGCATCGATTTCTGTAGACTCCAGCCTTTAT
AATCTGCCCAGGAGTTATTCCCATGATATCTTACCAAAGGTATCTCCATTGAATACCGAAGCAGATGGAGAACTCTTATG
TTTTTAATACCCCATCAGGGACATCAAATGTAGAGACTCAAATAAGGCATGTGTCTATTAGTTATGACATTCCCCTAATA
CCTGGTAATACC
ORF - retro_chof_2144 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.22 % |
Parental protein coverage: |
51.41 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | KLKHYAWKKRWFVLRSDL---DPDV-EYTKNDHAKKPR--IDLNLCQQVDAGLTFNKKEFENSYIFDINT |
| KLKHYAWK.RWF.L.SD....DPDV.EY.KNDH.KKP....DLNLCQQVDA.LTFNKKEFENSYIFD.NT |
Retrocopy | KLKHYAWKRRWFLLCSDRLTGDPDVLEYYKNDHDKKPIRIVDLNLCQQVDAELTFNKKEFENSYIFDTNT |
|
Parental | IDRIFYLVADSEEEM-NKWVRCICDICGFNPTEEDAVKPPGNSLQAPADLPLAINTAPLSTQVDSSSATL |
| .D..F.LVADS.EE...KW..CICDIC.FNPTEEDAVKPPGNSLQAPADL..A.NT...ST.VDSS.ATL |
Retrocopy | VDQFFCLVADS-EEE<DKWIPCICDICAFNPTEEDAVKPPGNSLQAPADLSSAVNTVLSSTRVDSSTATL |
|
Parental | PPPYQLINLPPHLETLGIQEDPQD-YLLL-INCQSKKPEPTRTHADPAKSTSSE-TDCNDNVPSHKNPAS |
| P..YQLINLPPHLET..I.EDPQD...LL.IN.QSKK.EPTRTHADPAKSTSSE....N.NVPS.KNPAS |
Retrocopy | PSAYQLINLPPHLETGSIHEDPQD<LILLLINSQSKKTEPTRTHADPAKSTSSE<NSYNHNVPSYKNPAS |
|
Parental | SLNKQGVNG-FFQQQMMYDSPLSRAASISVDSSLYNLPRSYSHDVLPKVSPSSTEADGEL-YVFNTPSGT |
| .LNKQGVNG...QQQMM.D.PLSR.ASISVDSSLYNLPRSYSHD.LPKVSP..TEADGEL.YVFNTPSGT |
Retrocopy | FLNKQGVNGXXXQQQMMCDCPLSRTASISVDSSLYNLPRSYSHDILPKVSPLNTEADGEL>YVFNTPSGT |
|
Parental | SSVETQMRHVSISYDIPPIPGNT |
| S.VETQ.RHVSISYDIP.IPGNT |
Retrocopy | SNVETQIRHVSISYDIPLIPGNT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2144 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.