RetrogeneDB ID: | retro_chof_2207 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_58255:3300..4019(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000008413 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.56 % |
Parental protein coverage: | 50.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LKFRRISAGEADIMILFSRREHGDFYPFDGKNGILAHAFGPGAGIGGDAHFDDDEIWTKNSRGHNFFLVA |
L.FR...AGEAD....FS...HGD...FDG...IL.HAF.PG...GG.AHFD.DEIW.K..R..NFFL.A | |
Retrocopy | LEFRKLNAGEADSIMSFSHGDHGDLCCFDGRSRILTHAFAPGVAAGGNAHFDEDEIWAKTTRDINFFLAA |
Parental | VHEIGHSLGLDHSNDP-KAIMFPTYRYVDLHTFSLSSDDIRGIQFLYGGPE--QHQPKPVPDEDVC--DP |
.HEIG.SLGLDHSND..KA.MFPTY.YVD..TF.LS.DDI.GIQ...GGPE..Q..P.P...E.V...D. | |
Retrocopy | IHEIGRSLGLDHSNDS<KATMFPTYGYVDPNTFRLSTDDIHGIQTPCGGPEEHQSMPVPNSAELVYI*DL |
Parental | NLRFNAVTTVGNKIFFFKDRFFWWKHVETPKISISSISNLWPTLPSGIQAAYEIGARNEVFLFKDDKYWL |
N.RFNAVTT..NKIFF.KDRFFWWKH.E.PKIS.S.ISNL.PTLPSGIQA.YEIGARNEVF.FKD.KYWL | |
Retrocopy | NSRFNAVTTIRNKIFFLKDRFFWWKHPEIPKISVSLISNL*PTLPSGIQATYEIGARNEVFHFKDGKYWL |
Parental | ISNLRIHPDYPKSIYSLGLPASVKKIDAAVF |
ISNLR..P.Y.KSI.SLG.P.SV.......F | |
Retrocopy | ISNLRPQPNYLKSIHSLGFPDSVXXXQFSYF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008413 | 6 retrocopies | |
Equus caballus | ENSECAG00000019445 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010062 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004250 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010221 | 1 retrocopy |