>retro_chof_2303
ATGGAGGAGCCTCAGAAAAATGATCTGAACATGCTGAGCCTTGAGAAGGATGACTCTCTCAAAAGTGCCAGCCCTCAGAT
TTCCGTTAGTGAATTTTCGTGCCACTGCTGTTACGACATCCTGGTTAACCCTACCACCTTGAACTGTGGGCATAGCTTCT
GCCGGCACTGCCTAGCTTTATGGTGGGTGTCTTAGAAGAAAACAGTGTCCAGAATGCAGAGAAAAATGGGAAGGTTTCCC
TAAAGTCAATATCCTCCTCAGGGATGCCATTGTAAAATTATTCCCTGATGCTGTAAGAATGAGATTTCCTTGCATTCAGC
AGAGTCATGACATAGTCCAGAGTCTCGCAGCCTTTCAAAAATATGGGAATGATCAGATTCCCTTCACTCCCAACACAGGC
CGAGTGAATCAGCAGAGAGGAGGAGGATTCTTTTCTGGAGTGCTCACAGCTTTAACTGGTGTGGCAGTGGTCCTGCTCGT
GTATCACTGGAGCAGCAGGGAATCTGAGCACGACCTCCTGGTCCGCAAGGCTGTGGCCAAATGGACAGCGGAAGAAGTTG
TTCTCTGGCTGGAGCAGCTGGGCCCCTGGGCCGCTCTCTACAGAGACAGGTTTTTATCTGAAAGAGTAAATGGAAGG
ORF - retro_chof_2303 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.99 % |
Parental protein coverage: |
66.67 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MEEPQKNDLNMLSLEKDHSLKSASPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLALWWVSS-KKTE |
| MEEPQKNDLNMLSLEKD.SLKSASPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLAL.W..S..... |
Retrocopy | MEEPQKNDLNMLSLEKDDSLKSASPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLAL-WWVS>RRKQ |
|
Parental | CPECREKWEGFPRVNILLRDAIEKLFPDAVRMRFEDIQQ-HDIVQSLAAFQKYGNDQIPFTPNTGRVNQQ |
| CPECREKWEGFP.VNILLRDAI.KLFPDAVRMRF..IQQ.HDIVQSLAAFQKYGNDQIPFTPNTGRVNQQ |
Retrocopy | CPECREKWEGFPKVNILLRDAIVKLFPDAVRMRFPCIQQSHDIVQSLAAFQKYGNDQIPFTPNTGRVNQQ |
|
Parental | RGGGFFSGVLTALTGVAVVLLVYHWSSRESEHDLLVHKAVAKWTAEEVVLWLEQLGPWAALYRDRFLSER |
| RGGGFFSGVLTALTGVAVVLLVYHWSSRESEHDLLV.KAVAKWTAEEVVLWLEQLGPWAALYRDRFLSER |
Retrocopy | RGGGFFSGVLTALTGVAVVLLVYHWSSRESEHDLLVRKAVAKWTAEEVVLWLEQLGPWAALYRDRFLSER |
|
Parental | VNGR |
| VNGR |
Retrocopy | VNGR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2303 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.